View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496-Insertion-5 (Length: 552)
Name: NF2496-Insertion-5
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496-Insertion-5 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 552
Target Start/End: Complemental strand, 20203108 - 20202571
Alignment:
| Q |
19 |
gcatcattctacattgaaggagatgccctcacgtggtgccattggatgcactctaatgcttagcttcattcttgacctactattctccatgctcttgaac |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203108 |
gcatcattctacatggaaggagatgccctcacgtggtgccattggatgcactctaatggttagcttcattcttgacctactattctccatgctcttgaac |
20203009 |
T |
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| Q |
119 |
tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203008 |
tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt |
20202909 |
T |
|
| Q |
219 |
agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctctggcctcaaacctgaaatccaaagagaggtccaagctttccaacca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20202908 |
agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctctggcctcaaacctgaaatccaaagagaggtccaagctttccaatca |
20202809 |
T |
|
| Q |
319 |
atg----nnnnnnnnnnnnatgcaattattttggaaaaattgcaggaagnnnnnnnttatggatatatcttagacgctatttcattgtcgccttgacaat |
414 |
Q |
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||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20202808 |
atgtctctctctctctctcatgcaattattttggaaaaattgcaggaagaaaaaaattatggatatatcttagacgctatttcattgtcgccttgacaat |
20202709 |
T |
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| Q |
415 |
ttcccatcttcatcatcccaacactctacaccacgccaacagccccgtcccagcctcattacaaaccctatccccacaaattcatcaaacccaacttccc |
514 |
Q |
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| T |
20202708 |
ttcccatcttcatcatcccaacactctacaccacgccaacagccccgtcccagcctcattacaaaccctatccccacaaattcatcaaacccaacttccc |
20202609 |
T |
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| Q |
515 |
taaaaacacgcccatccatcaaatgcctctcaccgaca |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20202608 |
taaaaacacgcccatccatcaaatgcctctcaccgaca |
20202571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 552
Target Start/End: Complemental strand, 22097131 - 22096594
Alignment:
| Q |
19 |
gcatcattctacattgaaggagatgccctcacgtggtgccattggatgcactctaatgcttagcttcattcttgacctactattctccatgctcttgaac |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097131 |
gcatcattctacatggaaggagatgccctcacgtggtgccattggatgcactctaatggttagcttcattcttgacctactattctccatgctcttgaac |
22097032 |
T |
|
| Q |
119 |
tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097031 |
tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt |
22096932 |
T |
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| Q |
219 |
agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctctggcctcaaacctgaaatccaaagagaggtccaagctttccaacca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22096931 |
agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctctggcctcaaacctgaaatccaaagagaggtccaagctttccaatca |
22096832 |
T |
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| Q |
319 |
atg----nnnnnnnnnnnnatgcaattattttggaaaaattgcaggaagnnnnnnnttatggatatatcttagacgctatttcattgtcgccttgacaat |
414 |
Q |
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||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22096831 |
atgtctctctctctctctcatgcaattattttggaaaaattgcaggaagaaaaaaattatggatatatcttagacgctatttcattgtcgccttgacaat |
22096732 |
T |
|
| Q |
415 |
ttcccatcttcatcatcccaacactctacaccacgccaacagccccgtcccagcctcattacaaaccctatccccacaaattcatcaaacccaacttccc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22096731 |
ttcccatcttcatcatcccaacactctacaccacgccaacagccccgtcccagcctcattacaaaccctatccccacaaattcatcaaacccaacttccc |
22096632 |
T |
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| Q |
515 |
taaaaacacgcccatccatcaaatgcctctcaccgaca |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
22096631 |
taaaaacacgcccatccatcaaatgcctctcaccgaca |
22096594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 39607592 - 39607650
Alignment:
| Q |
259 |
agttgtttcatctctggcctcaaacctgaaatccaaagagaggtccaagctttccaacc |
317 |
Q |
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||||| ||||||||||| |||||||| ||||| | ||||||||| |||||||| ||||| |
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| T |
39607592 |
agttgcttcatctctggtctcaaaccagaaattcgaagagaggtacaagcttttcaacc |
39607650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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