View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496-Insertion-7 (Length: 378)
Name: NF2496-Insertion-7
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496-Insertion-7 |
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| [»] scaffold0559 (3 HSPs) |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 40826055 - 40826424
Alignment:
| Q |
8 |
tatatatcatattactattagctagcagagtggtatgatgtagtaccttttttattgtacagagaacatttccttttagattcatgagagtaacttccct |
107 |
Q |
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| T |
40826055 |
tatatatcatattactattagctagcagagttgtatgatgtagtaccttttttattgtacagagaacatttccttttagattcatgagagtaacttccct |
40826154 |
T |
|
| Q |
108 |
tccaccctttctgtcatagttttcaactcgataaacgatgctaccatttgaatcataaacagtgcaaccattagagtgtagaacaagtgatttcatccac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40826155 |
tccaccctttctgtcatagttttcaactcgataaacgatgctaccatttgaatcataaacagtgcaaccattagagtgtagaacaagtgatttcatccac |
40826254 |
T |
|
| Q |
208 |
acagtatatgtttctcttttattacaactacggatgagacaacgattatgggattcagatgatgttgtggattcttgatgaggataaactcttgtcattc |
307 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40826255 |
acagtatatgtttctcttttattacaactacggttgagacaacgattatgggattcagaggatgttgtggattcttgatgaggataaactcttgtcattc |
40826354 |
T |
|
| Q |
308 |
tttgcgataattgtgagtaatgtgatattcgagatgttagcagagtatatttatatcacaattgtaggcc |
377 |
Q |
| |
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|||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
40826355 |
tttgtgataattgtgagtaatgtgatattcaatatgttagcagagtatatttatatcacaattgtaggcc |
40826424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 51 - 231
Target Start/End: Original strand, 40805585 - 40805765
Alignment:
| Q |
51 |
taccttttttattgtacagagaacatttccttttagattcatgagagtaacttcccttccaccctttctgtcatagttttcaactcgataaacgatgcta |
150 |
Q |
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||||||||| || || |||||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
40805585 |
tacctttttgatggtgcagagaacgtttccttttagattcatgagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtca |
40805684 |
T |
|
| Q |
151 |
ccatttgaatcataaacagtgcaaccattagagtgtagaacaagtgatttcatccacacagtatatgtttctcttttatta |
231 |
Q |
| |
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|||||||||||||| |||| |||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
40805685 |
ccatttgaatcataggcagtacaaccattggagtgaagaacaagtgatttcatccatacagtatacgtttctcttttatta |
40805765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 54 - 297
Target Start/End: Original strand, 40807184 - 40807427
Alignment:
| Q |
54 |
cttttttattgtacagagaacatttccttttagattcatgagagtaacttcccttccaccctttctgtcatagttttcaactcgataaacgatgctacca |
153 |
Q |
| |
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|||||| || || ||||||| ||| |||| | ||| ||||||| | ||||| ||| ||| ||| |||| ||||| ||||| |||||||||||| |||| |
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| T |
40807184 |
ctttttgatggtgcagagaagattgccttgttgatccatgagattgacttctcttttaccttttttgtcgtagttatcaacacgataaacgatgttaccc |
40807283 |
T |
|
| Q |
154 |
tttgaatcataaacagtgcaaccattagagtgtagaacaagtgatttcatccacacagtatatgtttctcttttattacaactacggatgagacaacgat |
253 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||||| | || | |||||||||| ||| |
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| T |
40807284 |
tttgaatcatagacagtgcaaccattggagtgtagaacaagtgatttcatccatacagtatatctctctcttttattagacctgctgatgagacaatgat |
40807383 |
T |
|
| Q |
254 |
tatgggattcagatgatgttgtggattcttgatgaggataaact |
297 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
40807384 |
catgggatttagaggatgttgtggattcttgatgaggataaact |
40807427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 54 - 231
Target Start/End: Original strand, 40812281 - 40812458
Alignment:
| Q |
54 |
cttttttattgtacagagaacatttccttttagattcatgagagtaacttcccttccaccctttctgtcatagttttcaactcgataaacgatgctacca |
153 |
Q |
| |
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|||||| || || ||||||||||| |||| ||||| ||||||| | ||||| |||||||| || |||||||||| |||||||||||||||||| |||| |
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| T |
40812281 |
ctttttgatggtgcagagaacattgccttgtagatccatgagattcacttctcttccacctttcttgtcatagttatcaactcgataaacgatgttaccc |
40812380 |
T |
|
| Q |
154 |
tttgaatcataaacagtgcaaccattagagtgtagaacaagtgatttcatccacacagtatatgtttctcttttatta |
231 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
40812381 |
tttgaatcatagacagtgcaaccattggagtggagaacaagtgatttcatccatacagtatatgtttctcttttatta |
40812458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 40817456 - 40817617
Alignment:
| Q |
70 |
agaacatttccttttagattcatgagagtaacttcccttccaccctttctgtcatagttttcaactcgataaacgatgctaccatttgaatcataaacag |
169 |
Q |
| |
|
|||| ||| |||| ||||| ||| ||| | ||||| |||| ||| ||| |||||||||| |||||||||||||||||| |||| ||||||||||| |||| |
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| T |
40817456 |
agaagattcccttgtagatccattagattcacttctcttctaccttttttgtcatagttatcaactcgataaacgatgttaccgtttgaatcatagacag |
40817555 |
T |
|
| Q |
170 |
tgcaaccattagagtgtagaacaagtgatttcatccacacagtatatgtttctcttttatta |
231 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
40817556 |
tgcaaccattggagtgaagaacaagtgatttcatccatacagtatatgtttctcttttatta |
40817617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 3620 - 3994
Alignment:
| Q |
8 |
tatatatcatattactattagctagcagagtggtatgatgtagt-acctttttta--ttgtacagagaacatttcc--ttttagattcatgagagtaact |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| | |||||||||||||||||||||| |
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| T |
3620 |
tatatatcatattactattagctagcagagttgtatgatgtagttacctttttttatttgtacagagaacattttcctttttagattcatgagagtaact |
3719 |
T |
|
| Q |
103 |
tcccttccaccctttctgtcatagttttcaactcgataaacgatgctaccatttgaatcataaacagtgcaaccattagagtgtagaacaagtgatttca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3720 |
tcccttccaccctttctgtcatagttttcaactcgataaacgatgctaccatttgaatcataaacagtgcaaccattagagtgtagaacaagtgatttca |
3819 |
T |
|
| Q |
203 |
tccacacagtatatgtttctcttttattacaactacggatgagacaacgattatgggattcagatgatgttgtggattcttgatgaggataaactcttgt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
3820 |
tccacacagtatatgtttctcttttattacaactacggttgagacaacgattatgggattcagaggatgttgtggattcttgatgaggataaactcttgt |
3919 |
T |
|
| Q |
303 |
cattctttgcgataattgtgagtaatgtgatattcgagatgttagcagagtatatttatatcacaattgtaggcc |
377 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
3920 |
cattctttgtgataattgtgagtaatgtgatattcaatatgttagcagagtatatttatatcacaattgtaggcc |
3994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 119 - 297
Target Start/End: Complemental strand, 7377 - 7199
Alignment:
| Q |
119 |
tgtcatagttttcaactcgataaacgatgctaccatttgaatcataaacagtgcaaccattagagtgtagaacaagtgatttcatccacacagtatatgt |
218 |
Q |
| |
|
|||| ||||| ||||| |||||||||||| |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| | |
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|
| T |
7377 |
tgtcgtagttatcaacacgataaacgatgttaccctttgaatcatagacagtgcaaccattggagtgtagaacaagtgatttcatccatacagtatatct |
7278 |
T |
|
| Q |
219 |
ttctcttttattacaactacggatgagacaacgattatgggattcagatgatgttgtggattcttgatgaggataaact |
297 |
Q |
| |
|
|||||||||||| | || | |||||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
7277 |
ctctcttttattagacctgctgatgagacaatgatcatgggatttagaggatgttgtggattcttgatgaggataaact |
7199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 9045 - 8879
Alignment:
| Q |
67 |
cagagaacatttcctttt-agattcatgagagtaacttcccttccaccctttctgtcatagtttt-caactcgataaacgatgctaccatttgaatcata |
164 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| | ||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |
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|
| T |
9045 |
cagagaacgtttcctttttagattcatgagatttacttctcttccaccctttctgtcatagtttttcaactcggtaaacgatgtcaccatttgaatcata |
8946 |
T |
|
| Q |
165 |
aacagtgcaaccattagagtgtagaacaagtgatttcatccacacagtatatgtttctcttttatta |
231 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
8945 |
ggcagtacaaccattggagtgaagaacaagtgatttcatccatacagtatacgtttctcttttatta |
8879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 70 - 231
Target Start/End: Complemental strand, 14908 - 14747
Alignment:
| Q |
70 |
agaacatttccttttagattcatgagagtaacttcccttccaccctttctgtcatagttttcaactcgataaacgatgctaccatttgaatcataaacag |
169 |
Q |
| |
|
|||| ||| |||| ||||| ||| ||| | ||||| |||| ||| ||| |||||||||| |||||||||||||||||| |||| ||||||||||| |||| |
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|
| T |
14908 |
agaagattcccttgtagatccattagattcacttctcttctaccttttttgtcatagttatcaactcgataaacgatgttaccgtttgaatcatagacag |
14809 |
T |
|
| Q |
170 |
tgcaaccattagagtgtagaacaagtgatttcatccacacagtatatgtttctcttttatta |
231 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14808 |
tgcaaccattggagtgaagaacaagtgatttcatccatacagtatatgtttctcttttatta |
14747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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