View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496_high_1 (Length: 502)
Name: NF2496_high_1
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496_high_1 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Complemental strand, 29568687 - 29568214
Alignment:
| Q |
19 |
ctagcctcttttcaaagccttcaaaaccgattgaagaaactgccaaggccatattgtttcagaaaaagaaaatgcacagcaccaaaacccgaaagcagtg |
118 |
Q |
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| T |
29568687 |
ctagcctcttttcaaagccttcaaaaccgattgaagaaactgccaaggccatattgtttcagaaaaagaaaatgcacagcaccaaaacccgaaagcagtg |
29568588 |
T |
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| Q |
119 |
aacaacgacagcacaattgcaaaaatagagactggaaagacgtcgtttgaagaagagtactgaatgattaaaattctaacgaaaataaacgcaactaaga |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568587 |
aacaacaacagcacaattgcaaaaatagagactggaaagacgtcgtttgaagaagagtactgaatgattaaaattctaacgaaaataaacgcaactaaga |
29568488 |
T |
|
| Q |
219 |
aaacacgtttcgagcaaaagtagatcaggatggcttcctagcacactgcacataattaacaaatacatgtattagcacaagtccataatcaaataagatt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29568487 |
aaacacgtttcgagcaaaagtagatcaggatggcttcctagcacactgcacataattaacaaatacatgtattagcacaagtcattaatcaaataagatt |
29568388 |
T |
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| Q |
319 |
agtttccaacaaatccagaatcggaatcatttaatcttagaacttacgttggagtaagcagctgatctgaacttcttgattccaccgtttggacgaacgt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568387 |
agtttccaacaaatccagaatcggaatcatttaatcttagaacttacgttggagtaagcagctgatctgaacttcttgattccaccgtttggacgaacgt |
29568288 |
T |
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| Q |
419 |
attcaatagtgtagccgaggggagcttcgtaaaataacgattcactactactggacttcttcttgcctcctttg |
492 |
Q |
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| T |
29568287 |
attcaatagtgtagccgaggggagcttcgtaaaataacgattcactactactggacttcttcttggctcctttg |
29568214 |
T |
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Target: scaffold0076 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 360 - 455
Target Start/End: Complemental strand, 3863 - 3768
Alignment:
| Q |
360 |
acttacgttggagtaagcagctgatctgaacttcttgattccaccgtttggacgaacgtattcaatagtgtagccgaggggagcttcgtaaaataa |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |||| ||||||||||||||||| ||||| |
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| T |
3863 |
acttacgttggagtaagcagctgatctgaacttcttgattccaccgttaggacgaatgtcttcaatgctgtatccgaggggagcttcgtagaataa |
3768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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