View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496_high_10 (Length: 332)
Name: NF2496_high_10
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 44473853 - 44473530
Alignment:
| Q |
1 |
cgtaatgttcgagtaggggcttacaaattgtactcctttcacagacaatggatgtgtttatgctactggtctcaatgattttggacagctcggtacatcg |
100 |
Q |
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| T |
44473853 |
cgtaatgttcgagtaggggcttacaaattgtactcctttcacagacaatggatgtgtttatgctactggtctcaatgattttggacagctcggtacatcg |
44473754 |
T |
|
| Q |
101 |
gagagtaaaccctactcagttgtatgattactttgccttttttcctgtatttttgtcaagtaaactgatgacaattgcaacatcttgttcttttgctcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44473753 |
gagagtaaaccctactcagttgtatgattactttgccttttttcctgtatttttgtcaagtaaactgatgacaattgcaacatcttgttcttttgctcta |
44473654 |
T |
|
| Q |
201 |
atgttcatgagtgcattacttgccagcattttcttgtttgcgatattttattcacttgtctgtaatgtttcaggtgccacttcaagtttttgggcacgag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44473653 |
atgttcatgagtgcattacttgccagcattttcttgtttgcgatattttattcacttgtctgtaatgtttcaggtgccacttcaagtttttgggcacgag |
44473554 |
T |
|
| Q |
301 |
aagaaagttgtacggatctctgct |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
44473553 |
aagaaagttgtacggatctctgct |
44473530 |
T |
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