View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496_high_2 (Length: 478)
Name: NF2496_high_2
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 140 - 405
Target Start/End: Complemental strand, 21716439 - 21716172
Alignment:
| Q |
140 |
ttcaatcaaagttaattcacaaaactacaaaaccaatacaatcatatatcaaatgtactctaattaacaataaaatcactaacaagaatatacaattgat |
239 |
Q |
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| T |
21716439 |
ttcaatcaaagttaattcacaaaactacaaaaccaatacaatcatatatcaaatgtactcttattaacaataaaattactaacaagaatatacaattgat |
21716340 |
T |
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| Q |
240 |
tgatctagggttaaattatgaataagttaattgccattatgatgagtgattgaataacactttacaaaatattaatcaatgaaaaatagtttttaacaca |
339 |
Q |
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| T |
21716339 |
tgatctagggttaaactatgaataagttaatttccattatgatgagtgattgaataacactttacaaaatattaatcaatgaaaaatagtttttaacaca |
21716240 |
T |
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| Q |
340 |
ttaatcacttcaacaacatagcaattaaacatgtacata--ctcaaacatagatcaatcaaaatatgc |
405 |
Q |
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| T |
21716239 |
ttaatcacttcaacaacatagcaattaaacgtgtacatactctcaaacataaatcaatcaaaatatgc |
21716172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 21720368 - 21720258
Alignment:
| Q |
39 |
attggatttgtgacacttgcaacaaag-attactaagttaaacaatgcaaacaaaatataattcaatattgaactagactttcactattgaatcaaatgt |
137 |
Q |
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||||||||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
21720368 |
attggatttgtgacacttgcaacaaaggattagtaagctaaacaatgcaaacacaatataattcaatattgaacaagactttcactattgaatcaattgt |
21720269 |
T |
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| Q |
138 |
tattcaatcaa |
148 |
Q |
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| T |
21720268 |
tattcaatcaa |
21720258 |
T |
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