View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2496_high_21 (Length: 206)

Name: NF2496_high_21
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2496_high_21
NF2496_high_21
[»] chr8 (7 HSPs)
chr8 (13-181)||(23189861-23190029)
chr8 (13-181)||(23182484-23182652)
chr8 (13-185)||(21179948-21180121)
chr8 (65-156)||(15805155-15805246)
chr8 (67-141)||(4159626-4159700)
chr8 (71-157)||(15799616-15799702)
chr8 (68-117)||(15812999-15813048)
[»] chr2 (3 HSPs)
chr2 (48-156)||(2681783-2681891)
chr2 (86-156)||(2723502-2723572)
chr2 (86-156)||(2745332-2745402)
[»] chr3 (1 HSPs)
chr3 (83-161)||(36066832-36066910)
[»] chr7 (7 HSPs)
chr7 (86-157)||(20243800-20243871)
chr7 (82-156)||(19939304-19939378)
chr7 (82-156)||(19970443-19970517)
chr7 (86-156)||(20062386-20062456)
chr7 (86-156)||(20294829-20294899)
chr7 (86-156)||(20303870-20303940)
chr7 (86-150)||(20231735-20231799)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 23190029 - 23189861
Alignment:
Q  13 aagaatattgaacgagcttgtttgataaaaaccagtattcttcttgccacttataatctctaacaaaagaactccaaagctaaagacgtcggatttaact 112  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23190029 aagaagattgaaagagcttgtttgataaaaaccagtattcttcttgccacttataatctctaacagaagaactccaaagctaaagacgtcggatttaact 23189930  T
Q  113 gaaaaaaggccttccattgcatattcaggagacatgtagccactaaaaacgaactataaagagttatta 181  Q
    || |||||||||||||| |||||||||||||||||||||||||||||||| ||  ||||||||||||||    
T  23189929 gagaaaaggccttccatagcatattcaggagacatgtagccactaaaaaccaagaataaagagttatta 23189861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 23182652 - 23182484
Alignment:
Q  13 aagaatattgaacgagcttgtttgataaaaaccagtattcttcttgccacttataatctctaacaaaagaactccaaagctaaagacgtcggatttaact 112  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  23182652 aagaagattgaaagagcttgtttgataaaaaccagtattcttcttgccacttataatctctaacaaaagcactccaaagctgaagacgtcggatttaact 23182553  T
Q  113 gaaaaaaggccttccattgcatattcaggagacatgtagccactaaaaacgaactataaagagttatta 181  Q
    || |||||||||||||| |||||||||||||||||||||||||||||||| ||  ||||||||||||||    
T  23182552 gagaaaaggccttccatagcatattcaggagacatgtagccactaaaaaccaagaataaagagttatta 23182484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 21179948 - 21180121
Alignment:
Q  13 aagaatattgaacgagcttgtttgataaaaaccagtattcttcttgccacttataatctctaacaaaagaactccaaagctaaagacgtcggatttaact 112  Q
    ||||| |||||| ||  |||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||| |||||||      
T  21179948 aagaagattgaaggaatttgtttgataaaaaccagtattcttctttccgcttataatctctaacaaaaggactccaaagctaaacacgtcagatttaatc 21180047  T
Q  113 gaaaaaaggccttccattgcatattcaggagacatgtagccact-aaaaacgaactataaagagttattagttg 185  Q
    ||| ||| ||||||||| |||||||| || |||||||||||||| |||||| | |  ||||||||| |||||||    
T  21180048 gaataaacgccttccatagcatattctggggacatgtagccactgaaaaaccatcattaaagagttcttagttg 21180121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 15805155 - 15805246
Alignment:
Q  65 ataatctctaacaaaagaactccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacatgtagccact 156  Q
    ||||| ||||| | |||||||||||||||||| || |||||||| |||||||| | |||  |||| |||||||| |||| |||||| |||||    
T  15805155 ataatttctaatacaagaactccaaagctaaaaacatcggatttcactgaaaataagccagccatagcatattctggagccatgtatccact 15805246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 4159626 - 4159700
Alignment:
Q  67 aatctctaacaaaagaactccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcagg 141  Q
    |||||||||||| | ||||||||||||| | || || |||||  | |||||||| ||||||||||||||||||||    
T  4159626 aatctctaacaataaaactccaaagctataaacatctgatttctcagaaaaaagtccttccattgcatattcagg 4159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 15799616 - 15799702
Alignment:
Q  71 tctaacaaaagaactccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacatgtagccacta 157  Q
    ||||||| ||||||||||||||| || || |||||||| |||||||| |  ||  |||| || |||||||||| |||||| ||||||    
T  15799616 tctaacacaagaactccaaagctgaaaacatcggatttcactgaaaataacccagccatagcgtattcaggagccatgtatccacta 15799702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 15812999 - 15813048
Alignment:
Q  68 atctctaacaaaagaactccaaagctaaagacgtcggatttaactgaaaa 117  Q
    |||||||||| ||||||||||||||| || || |||||||| ||||||||    
T  15812999 atctctaacacaagaactccaaagctgaaaacatcggatttcactgaaaa 15813048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 2681783 - 2681891
Alignment:
Q  48 tattcttcttgccacttataatctctaacaaaagaactccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacat 147  Q
    |||| ||||| |||||||| ||||||| || |||||||||||||||||| || || ||||||||||| ||    || ||||| |||||||||||||||||    
T  2681783 tatttttctttccacttatgatctctagcacaagaactccaaagctaaaaacatctgatttaactgagaagtttccgtccatagcatattcaggagacat 2681882  T
Q  148 gtagccact 156  Q
     ||||||||    
T  2681883 atagccact 2681891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 2723502 - 2723572
Alignment:
Q  86 ccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacatgtagccact 156  Q
    ||||| ||||| || || |||||  ||||||| || ||||||||||||||||| ||||||||||| |||||    
T  2723502 ccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacatgtatccact 2723572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 2745332 - 2745402
Alignment:
Q  86 ccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacatgtagccact 156  Q
    ||||| ||||| || || |||||  ||||||| || ||||||||||||||||| ||||||||||| |||||    
T  2745332 ccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacatgtatccact 2745402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 36066832 - 36066910
Alignment:
Q  83 actccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacatgtagccactaaaaa 161  Q
    ||||||||||| || || ||||||||||| |||||  ||||   |||||||||||||||||||||||||||||||||||    
T  36066832 actccaaagctgaatacatcggatttaacagaaaactggccgagcattgcatattcaggagacatgtagccactaaaaa 36066910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 20243871 - 20243800
Alignment:
Q  86 ccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacatgtagccacta 157  Q
    ||||||||||| || || |||||  ||||||| |  |||| |||||||||||||||||||||||||||||||    
T  20243871 ccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatgtagccacta 20243800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 19939378 - 19939304
Alignment:
Q  82 aactccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacatgtagccact 156  Q
    |||||||||||||||||| || |||||| | ||||| || |||| |||||||||||| |||||||| || |||||    
T  19939378 aactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcatattctggagacatataaccact 19939304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 19970517 - 19970443
Alignment:
Q  82 aactccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacatgtagccact 156  Q
    |||||||||||||||||| || |||||| | ||||| || |||| |||||||||||| |||||||| || |||||    
T  19970517 aactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcatattctggagacatataaccact 19970443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 20062386 - 20062456
Alignment:
Q  86 ccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacatgtagccact 156  Q
    ||||||||||| || || |||||  |||||||||| |||| |||||| |||||||||||||| || |||||    
T  20062386 ccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcgtattcaggagacatataaccact 20062456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 20294899 - 20294829
Alignment:
Q  86 ccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacatgtagccact 156  Q
    ||||||||||| || || |||||  ||||||| |  |||| ||||||||||||||||||||| ||||||||    
T  20294899 ccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatatagccact 20294829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 20303940 - 20303870
Alignment:
Q  86 ccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacatgtagccact 156  Q
    ||||||||||| || || |||||  |||||||||| |||  |||||| |||||||||||||| ||||||||    
T  20303940 ccaaagctaaaaacatctgatttctctgaaaaaagtcctcgcattgcgtattcaggagacatatagccact 20303870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 20231799 - 20231735
Alignment:
Q  86 ccaaagctaaagacgtcggatttaactgaaaaaaggccttccattgcatattcaggagacatgta 150  Q
    ||||||||||| || || |||||  ||||||| |  |||| ||||||||||||||||||||||||    
T  20231799 ccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatgta 20231735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University