View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496_high_4 (Length: 416)
Name: NF2496_high_4
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 473268 - 473410
Alignment:
| Q |
113 |
aatttcgatgagagttgttgggaagtagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtatttttagaaaatggtgaaat |
212 |
Q |
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| T |
473268 |
aatttagatgagagttgttgggaattagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtatttttagaaaatggtgaaat |
473367 |
T |
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| Q |
213 |
caaaagatgaatgagttgaaaagtctaagtacaattaccaaaa |
255 |
Q |
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| T |
473368 |
caaaagatgaatgagttgaaaagtctaagtacaattaccaaaa |
473410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 473452 - 473512
Alignment:
| Q |
356 |
gtttccttattaagaaataatttagaaagagtatcaaaaaaggttgttcttaaaagatgac |
416 |
Q |
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| T |
473452 |
gtttccttattaagaaataatttagaaagagtatgaaggaaggttgttcttaaaagatgac |
473512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 113 - 284
Target Start/End: Complemental strand, 41521343 - 41521186
Alignment:
| Q |
113 |
aatttcgatgagagttgttgggaagtagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtatttttagaaaatggtgaaat |
212 |
Q |
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| T |
41521343 |
aatttagatgagacttgttgggaagtagtaaaatagttcaagggtagaagaacaaaagctgaag--------------tatttttagaaaatggtgaaat |
41521258 |
T |
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| Q |
213 |
caaaagatgaatgagttgaaaagtctaagtacaattaccaaaagaattttctattaaatacttttcatatcg |
284 |
Q |
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| T |
41521257 |
caaaagatgaatgagttgaaaagtctaagtacaattaccaaaagaattttctattaaatacttttcatatcg |
41521186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 41521114 - 41521054
Alignment:
| Q |
356 |
gtttccttattaagaaataatttagaaagagtatcaaaaaaggttgttcttaaaagatgac |
416 |
Q |
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| T |
41521114 |
gtttccttattaagaaataatttagaaagagtatcaaggaaggttgttcctagaagatgac |
41521054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 119 - 281
Target Start/End: Original strand, 1242712 - 1242869
Alignment:
| Q |
119 |
gatgagagttgttgggaagtagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtatttttagaaaatggtgaaatcaaaag |
218 |
Q |
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| T |
1242712 |
gatgagacttgttgggaagtagtaaaatgg------ggtagaagaacaaaagctgaagcggtggtcgaaaagtatttttagaaaatggtgaaattaaaaa |
1242805 |
T |
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| Q |
219 |
a-tgaatgagttgaaaagtctaagtacaattaccaaaagaattttctattaaatacttttcata |
281 |
Q |
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| T |
1242806 |
aatgaatgagttgaaaagtctaagtacaattaccaaaagaattttctattaaatacttttcata |
1242869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 1242951 - 1243010
Alignment:
| Q |
356 |
gtttccttattaagaaataatttagaaagagtatcaaaaaaggttgttcttaaaagatgac |
416 |
Q |
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| T |
1242951 |
gtttccttataaagaaattatttacaaagagtatc-aagaaggttgttcctaaaagatgac |
1243010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 22206441 - 22206501
Alignment:
| Q |
356 |
gtttccttattaagaaataatttagaaagagtatcaaaaaaggttgttcttaaaagatgac |
416 |
Q |
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| T |
22206441 |
gtttccttattaagcaataatttagaaagagtgtcaaggaaggatgctcttagaagatgac |
22206501 |
T |
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