View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496_high_6 (Length: 390)
Name: NF2496_high_6
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 36691603 - 36691232
Alignment:
| Q |
1 |
tttggtgtatcaatacatttcaaatggaaaactttctgattggttgaatgatgatactacaacactaggatggtcaagggttattcaaattgcacttggg |
100 |
Q |
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| T |
36691603 |
tttggtgtatcaatacatttcaaatggaaaactttctgattggttgaatgatgatactaaaacactaggatggtcaagggttattcaaattgcacttggg |
36691504 |
T |
|
| Q |
101 |
atagcaagaggtttatgttgcctccatcatagcttgcatatggttcatcttaatataagctccgagtgtatcttgctagggaacacttttgagccgaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36691503 |
atagcaagaggtttatgttgcctccatcatagcttgcatatggttcatcttaatataagctccgagtgtatcttgctagggaacacttttgagcccaaaa |
36691404 |
T |
|
| Q |
201 |
tatccaattttggaggggccatgtttatgaataatgatgtgaaccaaaacataggatctggaaagaaggatgtttatgattttggttgtttgctttttga |
300 |
Q |
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| T |
36691403 |
tatccaattttggaggggccatgtttatgaataatgatgtgaaccaaaacataggatctggaaagaaggatgtttatgattttggttgtttgctttttga |
36691304 |
T |
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| Q |
301 |
gctgattaaggggaagaaatttggccaaacaagtgattgtttaagtaatactaatgttccgtttgcgaccta |
372 |
Q |
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| T |
36691303 |
gctgattaaggggaagaaatttggccaaacaagtgattgtttaagtaatactaatgttccgtttgcgaccta |
36691232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 23655284 - 23654964
Alignment:
| Q |
1 |
tttggtgtatcaatacatttcaaatggaaaactttctgattggttgaatgatgatactacaacactaggatggtcaagggttattcaaattgcacttggg |
100 |
Q |
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|||||||||||||||||| |||||||||| || |||||| | |||| || |||| || | ||| |||||||| ||||||| ||||||||||||| |
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| T |
23655284 |
tttggtgtatcaatacatgtcaaatggaaggctatctgataagctgaaagaa---actaaaaaattagaatggtcaaaggttattaaaattgcacttggt |
23655188 |
T |
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| Q |
101 |
atagcaagaggtttatgttgcctccatcatagcttgcatatggttcatcttaatataagctccgagtgtatcttgctagggaacacttttgagccgaaaa |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||| || || ||||||||| ||||||| | ||||||||| || | |
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| T |
23655187 |
gtagcaagaggcttatgttgcctccatcatagcttgcatatgctccatctcaatataaattctgactgtatcttgttagggaaaaattttgagccaaaga |
23655088 |
T |
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| Q |
201 |
tatccaattttggaggggccatgtttatgaataatgatgtgaaccaaaacataggatctggaaagaaggatgtttatgattttggttgtttgctttttga |
300 |
Q |
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| T |
23655087 |
tatccaatttcggagggatcatgtttatgaataatgatctggaaaaaaacataggacttgagaagaaggatgtttctgactttggttgtttgctttttga |
23654988 |
T |
|
| Q |
301 |
gctgattaaggggaagaaatttgg |
324 |
Q |
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||||||||| ||||| |||||||| |
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| T |
23654987 |
gctgattaatgggaataaatttgg |
23654964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 23803286 - 23803606
Alignment:
| Q |
1 |
tttggtgtatcaatacatttcaaatggaaaactttctgattggttgaatgatgatactacaacactaggatggtcaagggttattcaaattgcacttggg |
100 |
Q |
| |
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|||||||||||||||||| |||||||||| || |||||| | |||| || |||| || | ||| |||||||| ||||||| ||||||||||||| |
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| T |
23803286 |
tttggtgtatcaatacatgtcaaatggaaggctatctgataagctgaaagaa---actaaaaaattagaatggtcaaaggttattaaaattgcacttggt |
23803382 |
T |
|
| Q |
101 |
atagcaagaggtttatgttgcctccatcatagcttgcatatggttcatcttaatataagctccgagtgtatcttgctagggaacacttttgagccgaaaa |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||| || || ||||||||| ||||||| | ||||||||| || | |
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| T |
23803383 |
gtagcaagaggcttatgttgcctccatcatagcttgcatatgctccatctcaatataaattctgactgtatcttgttagggaaaaattttgagccaaaga |
23803482 |
T |
|
| Q |
201 |
tatccaattttggaggggccatgtttatgaataatgatgtgaaccaaaacataggatctggaaagaaggatgtttatgattttggttgtttgctttttga |
300 |
Q |
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|||||||||| |||||| ||||||||||||||||||| || | ||||||||||| || ||||||||||||| ||| |||||||||||||||||||| |
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| T |
23803483 |
tatccaatttcggagggatcatgtttatgaataatgatctggaaaaaaacataggacttgagaagaaggatgtttctgactttggttgtttgctttttga |
23803582 |
T |
|
| Q |
301 |
gctgattaaggggaagaaatttgg |
324 |
Q |
| |
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||||||||| ||||| |||||||| |
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| T |
23803583 |
gctgattaatgggaataaatttgg |
23803606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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