View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496_high_7 (Length: 385)
Name: NF2496_high_7
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 5187829 - 5187530
Alignment:
| Q |
13 |
gaaggagttatggaatttgcttgttatagttcaaacattaatcaactagcagacatcaagactaaacctttgaagctagaagtatttttcaaacaagggg |
112 |
Q |
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| T |
5187829 |
gaaggagttatggaatttgcttattatagttcaaacattaatcaaccagcagacatcaagactaaacctttgaagctagaagtatttttcaaacaagggg |
5187730 |
T |
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| Q |
113 |
agtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttagttgtttagcaagtaagctagtttgttatcaactaac |
212 |
Q |
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| T |
5187729 |
agtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttacttgtttggcaagtaagctagtttgttatcaactaac |
5187630 |
T |
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| Q |
213 |
ttttcatacgactctatatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaacctttttctttcccctctcatatt |
312 |
Q |
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| T |
5187629 |
ttttcatacgactctatatatgccatgtatcaatgtagttaatcaatgagaatcagttttaccctacatcttctaaccttttcctttcccctctcatatt |
5187530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 191 - 364
Target Start/End: Original strand, 4847911 - 4848084
Alignment:
| Q |
191 |
agctagtttgttatcaactaacttttcatacgactctatatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaacc |
290 |
Q |
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| T |
4847911 |
agctagtttgttatcaactaacttttcatacgactctatatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaact |
4848010 |
T |
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| Q |
291 |
tttttctttcccctctcatattcaaccactcaagaatttttagatattnnnnnnngttgaaagtgcttaatgaa |
364 |
Q |
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| T |
4848011 |
ttttcctttcccctctcatattcaaccactcaagaatttttagatattaaaaaaagtttaaagtgcttaatgaa |
4848084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 4847446 - 4847505
Alignment:
| Q |
47 |
acattaatcaactagcagacatcaagactaaacctttgaagctagaagtatttttcaaac |
106 |
Q |
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| T |
4847446 |
acattaatcaactagcagacatcaagactaaacctttgaagttagaagtattcttcaaac |
4847505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 369
Target Start/End: Original strand, 4850865 - 4850957
Alignment:
| Q |
278 |
acatcttctaacctttttctttcccctctcatattcaaccactcaagaatttttagatatt-nnnnnnngttgaaagtgcttaatgaaaaatg |
369 |
Q |
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| T |
4850865 |
acattttctaactttttcctttcccctctcatattcaaccactcaagaatttttagatattaaaaaaaagttgaaagtgcttaatgaaaaatg |
4850957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 4847607 - 4847688
Alignment:
| Q |
112 |
gagtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttagttgtttagcaagtaagctagt |
197 |
Q |
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| T |
4847607 |
gagtgattgttagatataaaaacttgttttattctcattagact----gttagttatggagttacttgttttgcaagtaagctagt |
4847688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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