View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496_low_11 (Length: 318)
Name: NF2496_low_11
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 9781258 - 9780975
Alignment:
| Q |
20 |
ttgagaatgttgaaaatcacaattttattatcttatcttctatatataaaccaacaaactcactttaa-gctgagcaaataaattaagaaagaaaaatat |
118 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||||||||||| |
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| T |
9781258 |
ttgagaatgttgaaaatcacaattttcttatcttatcttctatattgaaaccaacaaactcactttaaagctcagcaaacaaattaacaaagaaaaatat |
9781159 |
T |
|
| Q |
119 |
ttcaaacaaagacatattttaatttctactttgatttttcctttatagaaaacaataggcaggaatgaaggttgcatgtctcgttttggtgttgtgcatt |
218 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9781158 |
tccaaacaaagacatattttaatttctactttgatttttcctttatagaaaacaataggcaggaatgaaggttgcatgtctcgttttggtgttgtgcatt |
9781059 |
T |
|
| Q |
219 |
gttgttgcacatattgcagaagctgatagatttggctacattatttatactcttactccatgctatccttttcttctaggttca |
302 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9781058 |
gttgttgcacatattgcagaagctgatagatttgccttcattatttatactcttactccatgctatccttttcttataggttca |
9780975 |
T |
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