View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496_low_13 (Length: 282)
Name: NF2496_low_13
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 44871789 - 44871531
Alignment:
| Q |
17 |
actctgaagcctctagtacaagttctgaatcaacttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatc |
116 |
Q |
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| T |
44871789 |
actctgaagcctctagtacaagttctgaatcaacttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatc |
44871690 |
T |
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| Q |
117 |
aacaacaatggaaaatgagaatcatgcgagtcaatctgaaccagaagttacaaattcggtgggtagtggtaaaaaactaaaggttttaaaaactattaaa |
216 |
Q |
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| T |
44871689 |
aacaacaatggaaaatgagaatcatgtgagtcaatctgaaccagaagttacaaattcggtgggtagtggtaaaaaactaaaggttttaaaaactattaaa |
44871590 |
T |
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| Q |
217 |
atggagaagaatttggagggttatggtagaagagggaaagtattgaagatgagtataat |
275 |
Q |
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| T |
44871589 |
atggagaagaatttggagggttatggtagaagagggaaagtattgaagatgagtataat |
44871531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 47522492 - 47522748
Alignment:
| Q |
19 |
tctgaagcctctagtacaagttctgaatcaacttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaa |
118 |
Q |
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| T |
47522492 |
tctgaagcctctagtgccagttctgaatcaacttctgatgaggattctgaaacctctagttccggggatgttaataaggctatagtaggtacggtaccaa |
47522591 |
T |
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| Q |
119 |
caacaatggaaaatgagaatcatgcgagtcaatctgaaccagaagttacaaattcggtgggtagtggtaaaaaactaaaggttttaaaaactattaaaat |
218 |
Q |
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| T |
47522592 |
catcaatggaaaatgagaagcatgtgagtaaatttgaatcagaacttaatgattcggtaggtagtgataaaagaggaaaggttttaaaaacgagtttaat |
47522691 |
T |
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| Q |
219 |
ggagaagaatttggagggttatggtagaagagggaaagtattgaagatgagtataat |
275 |
Q |
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||||||||||| |||| || ||||||||||||||||||||| |||| |||||||| |
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| T |
47522692 |
ggagaagaattcagaggattgtggtagaagagggaaagtattaaagacaagtataat |
47522748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 190
Target Start/End: Original strand, 47528146 - 47528287
Alignment:
| Q |
49 |
acttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgcgagtc |
148 |
Q |
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| T |
47528146 |
acttctaatgaggattctgaagcctctagtttcatttctgttaaaaaagccacggttactacattatcaacatcaacggaaaatgagaagcatgtgattc |
47528245 |
T |
|
| Q |
149 |
aatctgaaccagaagttacaaattcggtgggtagtggtaaaa |
190 |
Q |
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| T |
47528246 |
aatctaaaccagaagttactaattcggtgggtagtggtaaaa |
47528287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 47549819 - 47549971
Alignment:
| Q |
44 |
aatcaacttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaa---caac---aatggaaaatgagaa |
137 |
Q |
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||||||||||| | ||| |||| || ||||| ||||| | ||||||||||||||||| | |||| |||||||| |||| || |||||||||||| |
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| T |
47549819 |
aatcaacttctagtaaggtttctaaagcctctagttccggctctgttaaaaaagctacactaactacggtatcaagatcaacttcaaaggaaaatgagaa |
47549918 |
T |
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| Q |
138 |
tcatgcgagtcaatctgaaccagaagttacaaattcggtgggtagtggtaaaa |
190 |
Q |
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|||| ||||||||||||| |||||||| | ||||| |||| ||||||||||| |
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| T |
47549919 |
acatgtgagtcaatctgaatcagaagtttctaattcagtggatagtggtaaaa |
47549971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 47522470 - 47522516
Alignment:
| Q |
42 |
tgaatcaacttctgatgaggattctgaaacctcttgttccagttctg |
88 |
Q |
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| T |
47522470 |
tgaatcaacttctgatgacgattctgaagcctctagtgccagttctg |
47522516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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