View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2496_low_16 (Length: 253)

Name: NF2496_low_16
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2496_low_16
NF2496_low_16
[»] chr3 (13 HSPs)
chr3 (51-242)||(2807687-2807878)
chr3 (51-221)||(2759634-2759804)
chr3 (51-215)||(2790740-2790904)
chr3 (51-219)||(2818977-2819145)
chr3 (51-232)||(2797781-2797962)
chr3 (51-228)||(2855351-2855528)
chr3 (51-228)||(2838141-2838318)
chr3 (51-215)||(2769489-2769653)
chr3 (51-215)||(5413306-5413470)
chr3 (51-228)||(2749415-2749592)
chr3 (68-182)||(3201381-3201495)
chr3 (96-182)||(3722009-3722095)
chr3 (134-182)||(3197940-3197988)
[»] scaffold0691 (1 HSPs)
scaffold0691 (51-221)||(5700-5870)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 51 - 242
Target Start/End: Original strand, 2807687 - 2807878
Alignment:
Q  51 aggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaag 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2807687 aggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaag 2807786  T
Q  151 catgggaactcttctgcaagaaagtatttagatttgatcttgatgggcactgtccaccggagcttgaggctatgtcaatagatattcttcga 242  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2807787 catgggaactcttctgcaagaaagtatttagattcgatcttgatgggcactgtccaccggagcttgaggctatgtcaatagatattgttcga 2807878  T

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Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 2759634 - 2759804
Alignment:
Q  51 aggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaag 150  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2759634 aggatcataatcaccactagaattatgcaagttgcagattttttcaagaaatcatttctagttcatgttcacaacttgcaacttttgactccaaacaaag 2759733  T
Q  151 catgggaactcttctgcaagaaagtatttagatttgatcttgatgggcactgtccaccggagcttgaggct 221  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||||  |||||||||||||||||||||    
T  2759734 catgggaactcttctgcaagaaagtatttagatatgatcttggagggcgttgtccaccggagcttgaggct 2759804  T

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Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 2790740 - 2790904
Alignment:
Q  51 aggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaag 150  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  2790740 aggatcataatcaccactagaatgatgcaagttgcagattttttcaagaaatcttttctagttcatgttcacaacttgcaacttttgacaccaaacaaag 2790839  T
Q  151 catgggaactcttctgcaagaaagtatttagatttgatcttgatgggcactgtccaccggagctt 215  Q
    |||||||||||||||||||||||| ||| |||||||| |||| |||||| |||||||| ||||||    
T  2790840 catgggaactcttctgcaagaaagcattcagatttgagcttggtgggcattgtccaccagagctt 2790904  T

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Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 219
Target Start/End: Original strand, 2818977 - 2819145
Alignment:
Q  51 aggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaag 150  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2818977 aggatcataatcaccacaagaatgatgcaagttgcagattttttcaagaaatcatttctagttcatgttcacaacttgcaacttttgactccaaacaaag 2819076  T
Q  151 catgggaactcttctgcaagaaagtatttagatttgatcttgatgggcactgtccaccggagcttgagg 219  Q
    ||||||||||||||||||||||||||||||| | ||| |||| ||| |  ||||||||||| |||||||    
T  2819077 catgggaactcttctgcaagaaagtatttaggtctgagcttggtggtcgttgtccaccggaacttgagg 2819145  T

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Target: chr3; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 51 - 232
Target Start/End: Original strand, 2797781 - 2797962
Alignment:
Q  51 aggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaag 150  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||     
T  2797781 aggatcatcatcaccacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacaacttgcaacttttgacaccaaacaaat 2797880  T
Q  151 catgggaactcttctgcaagaaagtatttagatttgatcttgatgggcactgtccaccggagcttgaggctatgtcaataga 232  Q
    |||||||||||||||||||||||| ||| ||||||||  ||| |||||| |||||||| |||||| |  | |||||||||||    
T  2797881 catgggaactcttctgcaagaaagcattcagatttgaggttggtgggcattgtccaccagagcttaactccatgtcaataga 2797962  T

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Target: chr3; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 2855528 - 2855351
Alignment:
Q  51 aggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaag 150  Q
    |||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||  |||| |||| ||| ||||||||||| ||||||||||||    
T  2855528 aggatcataatcactactagaatgatgcatgttgcagaatttttcaagaaatcctttctaactcatattcataacctgcaacttttgcctccaaacaaag 2855429  T
Q  151 catgggaactcttctgcaagaaagtatttagatttgatcttgatgggcactgtccaccggagcttgaggctatgtcaa 228  Q
    |||||||||||||||| |||||||||||||||||||| | || |||||| |||||||| |||||||||||| ||||||    
T  2855428 catgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttgaggctgtgtcaa 2855351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 2838318 - 2838141
Alignment:
Q  51 aggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaag 150  Q
    |||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||  |||| |||| ||| ||||||||||| ||||||||||||    
T  2838318 aggatcataatcactactagaatgatgcatgttgcagaatttttcaagaaatcctttctaactcatattcataacctgcaacttttgcctccaaacaaag 2838219  T
Q  151 catgggaactcttctgcaagaaagtatttagatttgatcttgatgggcactgtccaccggagcttgaggctatgtcaa 228  Q
    |||||||||||||||| |||||||||||||||||||| | || |||||| |||||||| |||||| ||||| ||||||    
T  2838218 catgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaa 2838141  T

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Target: chr3; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 2769489 - 2769653
Alignment:
Q  51 aggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaag 150  Q
    ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||| |||||||    
T  2769489 aggatcataataaccacaagaatgatgcatgttgcagattttttcaagaaatcctttctagttcatgttcttaacatgcaacttttgcctcctaacaaag 2769588  T
Q  151 catgggaactcttctgcaagaaagtatttagatttgatcttgatgggcactgtccaccggagctt 215  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||| ||||||    
T  2769589 catgggaactcttctgcaagaaagcattcagatttgaacttgatgggcaatgtccaccagagctt 2769653  T

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Target: chr3; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 5413306 - 5413470
Alignment:
Q  51 aggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaag 150  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||  ||||||||||| ||||||||||| ||||||||||||    
T  5413306 aggatcataatcaccactagaatgatgcaagttgcggattttttcaaaaaatcctttctagtatatgttcacaacctgcaacttttgcctccaaacaaag 5413405  T
Q  151 catgggaactcttctgcaagaaagtatttagatttgatcttgatgggcactgtccaccggagctt 215  Q
    |||||||||| | ||||||||| || ||| ||||||| |||| |||| | |||||| ||||||||    
T  5413406 catgggaactttactgcaagaaggtgtttggatttgaacttggtgggaattgtccatcggagctt 5413470  T

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Target: chr3; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 51 - 228
Target Start/End: Original strand, 2749415 - 2749592
Alignment:
Q  51 aggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaag 150  Q
    ||||| || ||||| |||||||||||| | ||||||||||||||||| ||||||||||||  |||| |||||||| ||||||||||| ||||||||||||    
T  2749415 aggattatcatcaccactagaatgatgtatgttgcagattttttcaaaaaatcctttctaactcatattcacaacctgcaacttttgcctccaaacaaag 2749514  T
Q  151 catgggaactcttctgcaagaaagtatttagatttgatcttgatgggcactgtccaccggagcttgaggctatgtcaa 228  Q
    |||||||||| |||||||||| ||||||||||| ||| |||| ||| || |||||| | || ||||||||| ||||||    
T  2749515 catgggaacttttctgcaagagagtatttagatatgagcttggtggacattgtccatcagaacttgaggctgtgtcaa 2749592  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 3201381 - 3201495
Alignment:
Q  68 tagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgc 167  Q
    |||||||||||| || || || | ||| |||||||| ||||| |||||| ||||| || | |||| |||| ||||||||||||| |||||||| || |||    
T  3201381 tagaatgatgcatgtagctgaatattttaagaaatcttttcttgttcatattcaccacctacaacctttgcctccaaacaaagcgtgggaactgttttgc 3201480  T
Q  168 aagaaagtatttaga 182  Q
    || || | |||||||    
T  3201481 aacaaggcatttaga 3201495  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 3722009 - 3722095
Alignment:
Q  96 aagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtatttaga 182  Q
    |||||||| ||||  |||||| ||||| |  | |||| ||||| ||||||||||||||||||||| || ||||| || |||||||||    
T  3722009 aagaaatcttttcctgttcatattcacgaactacaacctttgattccaaacaaagcatgggaactgttttgcaacaaggtatttaga 3722095  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 3197988 - 3197940
Alignment:
Q  134 tttgactccaaacaaagcatgggaactcttctgcaagaaagtatttaga 182  Q
    ||||||||||||||||||||||||||| || ||||| || | |||||||    
T  3197988 tttgactccaaacaaagcatgggaactgttttgcaacaaggcatttaga 3197940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 5870 - 5700
Alignment:
Q  51 aggatcataatcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaag 150  Q
    ||||| |||||||| || ||||||||||  ||||| || |||||||||||||||||| ||||||||||||||||  ||||||| ||| ||||||||||||    
T  5870 aggattataatcaccacaagaatgatgcttgttgccgaatttttcaagaaatcctttatagttcatgttcacaaactgcaactcttgcctccaaacaaag 5771  T
Q  151 catgggaactcttctgcaagaaagtatttagatttgatcttgatgggcactgtccaccggagcttgaggct 221  Q
     |||||||||||||||||| ||||||||||||||||| | || |||||| |||||||  ||||||||||||    
T  5770 tatgggaactcttctgcaaaaaagtatttagatttgaacctggtgggcattgtccacttgagcttgaggct 5700  T

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