View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2496_low_18 (Length: 248)

Name: NF2496_low_18
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2496_low_18
NF2496_low_18
[»] chr7 (3 HSPs)
chr7 (99-248)||(42513187-42513346)
chr7 (106-236)||(38572348-38572488)
chr7 (194-248)||(41712265-41712319)
[»] chr5 (3 HSPs)
chr5 (99-248)||(8123394-8123553)
chr5 (99-248)||(671328-671487)
chr5 (99-180)||(41709389-41709470)
[»] chr3 (6 HSPs)
chr3 (106-243)||(36326375-36326512)
chr3 (99-248)||(30911921-30912080)
chr3 (99-248)||(55211809-55211968)
chr3 (99-182)||(14029173-14029256)
chr3 (173-246)||(32414686-32414759)
chr3 (97-156)||(32414500-32414559)
[»] chr6 (7 HSPs)
chr6 (110-248)||(33242726-33242873)
chr6 (105-248)||(4834589-4834744)
chr6 (110-237)||(7415516-7415653)
chr6 (99-180)||(13886454-13886535)
chr6 (110-233)||(7422524-7422657)
chr6 (110-233)||(7426463-7426596)
chr6 (14-71)||(30513297-30513355)
[»] chr1 (3 HSPs)
chr1 (99-248)||(18584011-18584170)
chr1 (99-217)||(13087573-13087700)
chr1 (110-174)||(21076184-21076248)
[»] chr4 (3 HSPs)
chr4 (99-180)||(36050519-36050600)
chr4 (99-180)||(36053778-36053859)
chr4 (133-248)||(20441044-20441168)
[»] chr2 (2 HSPs)
chr2 (142-248)||(31211598-31211714)
chr2 (99-182)||(4472702-4472785)
[»] chr8 (3 HSPs)
chr8 (99-180)||(44765129-44765210)
chr8 (99-154)||(24249050-24249105)
chr8 (98-180)||(44761822-44761904)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 99 - 248
Target Start/End: Complemental strand, 42513346 - 42513187
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctag----------aaggtctatt 188  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          ||||||||||    
T  42513346 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgactcaccttaatctagaaggatctagaaggtctatt 42513247  T
Q  189 gttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagt 248  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42513246 gttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagt 42513187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 38572488 - 38572348
Alignment:
Q  106 atatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaa----------tctagaaggtctattgttaggg 195  Q
    ||||||||||||| ||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||          |||||||||| | |||||||||    
T  38572488 atatttagaataatgagtactaatgtgctgactcagctagttctagaagttattatgactcaccttaatctaaaaggatctagaaggtatcttgttaggg 38572389  T
Q  196 gatgatattgagtatgttagggtacacttatcttattatga 236  Q
    ||| |||||||||| ||||||||||||||||||||||||||    
T  38572388 gataatattgagtaagttagggtacacttatcttattatga 38572348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 41712265 - 41712319
Alignment:
Q  194 gggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagt 248  Q
    ||||| ||||| ||||||||||||| ||||||| |||||||||| | ||||||||    
T  41712265 gggataatattaagtatgttagggtgcacttattttattatgagtaggcacaagt 41712319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 99 - 248
Target Start/End: Original strand, 8123394 - 8123553
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg----------tctatt 188  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||          ||||||    
T  8123394 tgataggatatttagaataaggagcactaatctggtgactcatctagttctagaagttattatgactgaccttaatctagaaggatctagaagatctatt 8123493  T
Q  189 gttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagt 248  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8123494 gttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagt 8123553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 248
Target Start/End: Original strand, 671328 - 671487
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg----------tctatt 188  Q
    ||||| |||||||||||||||||||| |||| | |||||||  ||| ||||||| |||||||||| ||||||||||||||||||          | ||||    
T  671328 tgataggatatttagaataaggagcattaatatagtgactcggctaattctagatgttattatgactcaccttaatctagaaggatccataagatatatt 671427  T
Q  189 gttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagt 248  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  671428 gttaggggataatattgagtaggttagggtacacttatcttattatgagtatgcacaagt 671487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 41709389 - 41709470
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaa 180  Q
    ||||| ||||| |||||||||||  |  ||||||||||||| |||||||||||||| || ||||| ||| ||||||||||||    
T  41709389 tgataggatatctagaataaggaatataaatgtggtgactcctctagttctagaaggtagtatgactcatcttaatctagaa 41709470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 36326375 - 36326512
Alignment:
Q  106 atatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaaggtctattgttaggggatgatattg 205  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||||||    
T  36326375 atatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaaggtatcttgttaggggatgatattg 36326474  T
Q  206 agtatgttagggtacacttatcttattatgagcatgca 243  Q
    ||||||||||||| ||||||  |||||||||| |||||    
T  36326475 agtatgttagggtgcacttaggttattatgagtatgca 36326512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 99 - 248
Target Start/End: Original strand, 30911921 - 30912080
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg-tcta---------tt 188  Q
    ||||| |||| ||||||||| ||| ||||||||| ||||||   ||||||||||||||||||||| |||||||||||||||||| ||||         ||    
T  30911921 tgataggatacttagaataatgagtactaatgtgatgactcggttagttctagaagttattatgactcaccttaatctagaaggatctaaaatatatctt 30912020  T
Q  189 gttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagt 248  Q
    |||||||||| ||||||||||||||||||| ||||||| ||||| |||| ||||||||||    
T  30912021 gttaggggataatattgagtatgttagggtgcacttattttattgtgagtatgcacaagt 30912080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 248
Target Start/End: Complemental strand, 55211968 - 55211809
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg----------tctatt 188  Q
    ||||| ||||||||||||||||||||||||||||| |||||  ||||||||| ||||||| | || ||| ||||||||| ||||          | ||||    
T  55211968 tgataggatatttagaataaggagcactaatgtggcgactcggctagttctaaaagttatcacgactcatcttaatctaaaaggatccataaggtatatt 55211869  T
Q  189 gttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagt 248  Q
    | |||||||| ||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  55211868 ggtaggggataatattgagtatgttagggtgcacttatcttattatgaatatgcacaagt 55211809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 14029173 - 14029256
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg 182  Q
    ||||| ||||||||||||||| ||||| |||| ||||||||  ||||||||||||| ||  |||| ||| ||||||||||||||    
T  14029173 tgataagatatttagaataagaagcacaaatgcggtgactcggctagttctagaaggtagaatgaatcatcttaatctagaagg 14029256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 32414686 - 32414759
Alignment:
Q  173 atctagaaggtctattgttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaa 246  Q
    ||||||||||| ||||||  |||||| ||||| ||||||||| ||| ||||||||||||| ||||  |||||||    
T  32414686 atctagaaggtatattgtctggggataatattaagtatgttatggtgcacttatcttattttgagtttgcacaa 32414759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 32414500 - 32414559
Alignment:
Q  97 tgtgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagtt 156  Q
    ||||||| |||| |||||||||||| || ||||||||||||||| |||| | ||||||||    
T  32414500 tgtgataggatagttagaataaggaacattaatgtggtgactcagctagatttagaagtt 32414559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 110 - 248
Target Start/End: Original strand, 33242726 - 33242873
Alignment:
Q  110 ttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcacctta----------atctagaaggtctattgttaggggatg 199  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||          || ||||||   ||||||||||||||     
T  33242726 ttagaataaggagcactaatatggtgactcagctagttctagaagttgttatgagtcatcttagtctataaggatttagaagacatattgttaggggata 33242825  T
Q  200 atattgagtatgttagggtacacttatcttattatgagcatgcacaagt 248  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||||||    
T  33242826 atattgagtatgtta-ggtgcacttatcttattatgagtatgcacaagt 33242873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 4834589 - 4834744
Alignment:
Q  105 gatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg-tcta-----------ttgtta 192  Q
    |||||||||||||| ||  || ||||||||||||||   |||||||||||||||||||| |||||||||||||||||| ||||           || |||    
T  4834589 gatatttagaataatgactacgaatgtggtgactcagtaagttctagaagttattatgactcaccttaatctagaaggatctaaaaggagtatcttatta 4834688  T
Q  193 ggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagt 248  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||| ||||    
T  4834689 ggggataatattgagtatgttagggtgcacttatcttattatgagtatgcataagt 4834744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 237
Target Start/End: Original strand, 7415516 - 7415653
Alignment:
Q  110 ttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg-tcta---------ttgttaggggatg 199  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||||  |||||||| ||| |||||| ||||||| ||||         ||||||||||||     
T  7415516 ttagaataatgagtactaatgtggtgactcagctagttctagaaaatattatgactcatcttaatttagaaggatctagaaattatcttgttaggggata 7415615  T
Q  200 atattgagtatgttagggtacacttatcttattatgag 237  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  7415616 atattgagtatgttatggtgcacttatcttattatgag 7415653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 13886454 - 13886535
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaa 180  Q
    ||||| |||| ||||||||||||||||||||||||||||||  ||||||||| || ||||||||| ||||||||||||||||    
T  13886454 tgataggatagttagaataaggagcactaatgtggtgactctgctagttctataaattattatgactcaccttaatctagaa 13886535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 7422524 - 7422657
Alignment:
Q  110 ttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg-tcta---------ttgttaggggatg 199  Q
    ||||||||| ||| ||||||||||||||| | ||||||||||||  |||||||| ||| |||||| ||||||| ||||         ||||||||||||     
T  7422524 ttagaataatgagtactaatgtggtgacttagctagttctagaaaatattatgaatcatcttaatttagaaggatctagaagttatcttgttaggggata 7422623  T
Q  200 atattgagtatgttagggtacacttatcttatta 233  Q
    | ||||||||||||| ||| ||||||||||||||    
T  7422624 acattgagtatgttatggtgcacttatcttatta 7422657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 7426463 - 7426596
Alignment:
Q  110 ttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg-tcta---------ttgttaggggatg 199  Q
    ||||||||| ||| | ||||||||||||||| ||||||||||||  |||||| | ||| |||||||||| ||| ||||         ||||||||||||     
T  7426463 ttagaataatgagtattaatgtggtgactcagctagttctagaaaatattataactcatcttaatctagtaggatctagaagttatcttgttaggggata 7426562  T
Q  200 atattgagtatgttagggtacacttatcttatta 233  Q
    ||||||||||||||| ||| ||||||||||||||    
T  7426563 atattgagtatgttatggtgcacttatcttatta 7426596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 30513297 - 30513355
Alignment:
Q  14 ctcattcaacatttttcc-agattttgtcatctatccatccttcaaccagtgtcaatca 71  Q
    |||||||||||||||| | |||||||| ||||||||  |||||||||||||||||||||    
T  30513297 ctcattcaacattttttctagattttgccatctatcattccttcaaccagtgtcaatca 30513355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 248
Target Start/End: Complemental strand, 18584170 - 18584011
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctag----------aaggtctatt 188  Q
    ||||| |||||||||||||||||||| |||||||||| || | |||||| || |||||||||||| ||||||||||||||          ||||| ||||    
T  18584170 tgataggatatttagaataaggagcattaatgtggtggcttagctagttataaaagttattatgactcaccttaatctagaaggatctaaaaggtatatt 18584071  T
Q  189 gttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagt 248  Q
     ||||||||| ||||||||||||||||||| || ||||| |||||| || ||||||||||    
T  18584070 attaggggataatattgagtatgttagggtgcagttatcgtattataagtatgcacaagt 18584011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 13087573 - 13087700
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcacctta---------atctagaaggtctattg 189  Q
    ||||| |||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||||| ||||||||         ||||||||||| |||||    
T  13087573 tgataggatattcagaataaggagcattaatgtggtgactcggctagttctagaagttattatgactcaccttaatctagacgatctagaaggtatattg 13087672  T
Q  190 ttaggggatgatattgagtatgttaggg 217  Q
    ||||||||| |||| |||||||||||||    
T  13087673 ttaggggataatatcgagtatgttaggg 13087700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 21076248 - 21076184
Alignment:
Q  110 ttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaat 174  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||  | ||||| ||||||||||    
T  21076248 ttagaataaggagtactaatgtggtgactcacctagttctagaagcaaatatgattcaccttaat 21076184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 36050519 - 36050600
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaa 180  Q
    ||||| |||||||||||||| ||| ||||||||||||||||  ||||||||||||| || ||||| ||| ||||||||||||    
T  36050519 tgataggatatttagaataatgagtactaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 36050600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 36053778 - 36053859
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaa 180  Q
    ||||| |||||||||||||| ||| ||||||||||||||||  ||||||||||||| || ||||| ||| ||||||||||||    
T  36053778 tgataggatatttagaataatgagtactaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 36053859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 20441168 - 20441044
Alignment:
Q  133 gtgactcatctagttctagaagttattatgagtcaccttaatctagaaggtcta---------ttgttaggggatgatattgagtatgttagggtacact 223  Q
    ||||| || ||||||||||||||| |||||| |||||||||| |||||| ||||         |||||| ||||| |||||||| |||| ||||| ||||    
T  20441168 gtgacgcagctagttctagaagttgttatgactcaccttaatttagaagatctaaaaagtatattgttaagggataatattgagcatgtcagggtgcact 20441069  T
Q  224 tatcttattatgagcatgcacaagt 248  Q
    |||||||||||||| ||||||||||    
T  20441068 tatcttattatgagtatgcacaagt 20441044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 31211598 - 31211714
Alignment:
Q  142 ctagttctagaagttattatgagtcaccttaatctagaagg----------tctattgttaggggatgatattgagtatgttagggtacacttatcttat 231  Q
    ||||||||||||||| |||||| |||| |||||||||||||          | |||||||||||||| |||||||||||||||| || |||||||||||     
T  31211598 ctagttctagaagttgttatgactcactttaatctagaaggatttagaagatatattgttaggggataatattgagtatgttagagtgcacttatcttaa 31211697  T
Q  232 tatgagcatgcacaagt 248  Q
    |||||| ||||| ||||    
T  31211698 tatgagtatgcataagt 31211714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 4472702 - 4472785
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg 182  Q
    ||||| |||| ||| ||||||||||| | || |||||||||| |||||||||||||  |  |||| ||||||||||||||||||    
T  4472702 tgataggatagttaaaataaggagcatttatatggtgactcacctagttctagaagcaaagatgattcaccttaatctagaagg 4472785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 44765129 - 44765210
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaa 180  Q
    ||||| ||||| |||||||||||  |  |||||||||||||  ||||||||||||| || ||||| ||| ||||||||||||    
T  44765129 tgataggatatctagaataaggaatataaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 44765210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 24249050 - 24249105
Alignment:
Q  99 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaag 154  Q
    ||||| |||||| | ||||||||||||| ||||||||| || ||||||||||||||    
T  24249050 tgataggatattcaaaataaggagcactcatgtggtgattcgtctagttctagaag 24249105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 44761822 - 44761904
Alignment:
Q  98 gtgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaa 180  Q
    |||||| ||||| |||||||||||  |  |||||||||||||  ||||||||||||| || | ||| ||| ||||||||||||    
T  44761822 gtgataggatatctagaataaggaatataaatgtggtgactcccctagttctagaaggtagtttgactcatcttaatctagaa 44761904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University