View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2496_low_22 (Length: 239)
Name: NF2496_low_22
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496_low_22 |
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| [»] chr3 (4 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 38791996 - 38791776
Alignment:
| Q |
18 |
gtaatctctaaccttttgtactccttgtgctaggctttattgaatgaattaagttgtttaagaaaaaactacttttgcaacttcttagctttattttgtg |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38791996 |
gtaatctctagccttttgtactccttgtgctaggctttattgaatgaattaagttgtttaagaaaaaactacttttgcaacttcttagctttattttgtg |
38791897 |
T |
|
| Q |
118 |
ttcaaattttaatatttttatttgnnnnnnntatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgt |
217 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
38791896 |
ttc-tattttaatatttttatttgaaaaatatatcatgttattgatacaaaaagaaatacaacttaaaaacatgaaaacttgaagcacacaaattgatgt |
38791798 |
T |
|
| Q |
218 |
tcgtgctttcattcattcacat |
239 |
Q |
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|| ||||||||||||||||||| |
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| T |
38791797 |
tcctgctttcattcattcacat |
38791776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 407730 - 407503
Alignment:
| Q |
18 |
gtaatctctaaccttttgtactccttgtgctaggctttattgaatgaattaagttgtt-taagaaa--aaactacttttgcaacttcttagctttatttt |
114 |
Q |
| |
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|||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||| | || || || |||||| ||||||||||||| |
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| T |
407730 |
gtaaactctagccttttgcactccttgtgctaggctttattgaatgaattaatcagttataaaaaatgacaccgctctttcaactttttagctttatttt |
407631 |
T |
|
| Q |
115 |
gtgttcaaattttaatatttttatttgnnnnnnntatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattga |
214 |
Q |
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| T |
407630 |
gcgatcaaactataatatttttatttggaaggaatatcatgttattgatgctgaaagaaatactactaaagaatattaaaacttgaagtacacaaattga |
407531 |
T |
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| Q |
215 |
tgttcgtgc---tttcattcattcacat |
239 |
Q |
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||||| ||| ||||||||||| |||| |
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| T |
407530 |
tgttcctgcacttttcattcattgacat |
407503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 416212 - 416439
Alignment:
| Q |
18 |
gtaatctctaaccttttgtactccttgtgctaggctttattgaatgaattaagttgtt-taagaaa--aaactacttttgcaacttcttagctttatttt |
114 |
Q |
| |
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|||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||| | || || || |||||| ||||||||||||| |
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| T |
416212 |
gtaaactctagccttttgcactccttgtgctaggctttattgaatgaattaatcagttataaaaaatgacaccgctctttcaactttttagctttatttt |
416311 |
T |
|
| Q |
115 |
gtgttcaaattttaatatttttatttgnnnnnnntatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattga |
214 |
Q |
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| | ||||| | ||||||||||||||| ||||||||||||||| | ||||||||||| ||| |||||||| ||||||||||| ||||||||||| |
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| T |
416312 |
gcgatcaaactataatatttttatttggaaggaatatcatgttattgatgctgaaagaaatactactaaagaatattaaaacttgaagtacacaaattga |
416411 |
T |
|
| Q |
215 |
tgttcgtgc---tttcattcattcacat |
239 |
Q |
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||||| ||| ||||||||||| |||| |
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| T |
416412 |
tgttcctgcacttttcattcattgacat |
416439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 26305591 - 26305647
Alignment:
| Q |
85 |
actacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttg |
141 |
Q |
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|||||||||||||||| ||||||||||||||| || |||||| ||||||| ||||| |
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| T |
26305591 |
actacttttgcaactttttagctttattttgtattagaattttgatattttcatttg |
26305647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 24184213 - 24183986
Alignment:
| Q |
18 |
gtaatctctaaccttttgtactccttgtgctaggctttattgaatgaattaagttgtt-taagaaa--aaactacttttgcaacttcttagctttatttt |
114 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||| ||||||||||||||||| ||| ||| ||| | || || || |||||| ||||||||||||| |
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| T |
24184213 |
gtaaactctagccttttgcactccttgtgctaggttttattgaatgaattaatcagttataaaaaatgacaccgctctttcaactttttagctttatttt |
24184114 |
T |
|
| Q |
115 |
gtgttcaaattttaatatttttatttgnnnnnnntatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattga |
214 |
Q |
| |
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||| ||||| | ||||||||||||||| ||||||||||||||| | ||||||||||| ||| |||||||| ||||||||||| ||||||||||| |
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| T |
24184113 |
gtgatcaaactgtaatatttttatttggaaggaatatcatgttattgatgccgaaagaaatactactaaagaatattaaaacttgaagtacacaaattga |
24184014 |
T |
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| Q |
215 |
tgttcgtgc---tttcattcattcacat |
239 |
Q |
| |
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||||| ||| ||||||||||| |||| |
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| T |
24184013 |
tgttcctgcacttttcattcattgacat |
24183986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 20786244 - 20786178
Alignment:
| Q |
149 |
tatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgtt |
218 |
Q |
| |
|
||||||||||||||| | |||||||||| | |||||||| ||||||||||| ||||||||||||||| |
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| T |
20786244 |
tatcatgttattgatgccaaaagaaatacta---aagaatattaaaacttgaagtacacaaattgatgtt |
20786178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 24345795 - 24346022
Alignment:
| Q |
18 |
gtaatctctaaccttttgtactccttgtgctaggctttattgaatgaattaagttgtt-taagaaa--aaactacttttgcaacttcttagctttatttt |
114 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||| | || || || |||||| ||||||||||||| |
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|
| T |
24345795 |
gtaaactctagccttttgcactccttgtgctaggctttattgaatgaattaatcagttataaaaaatgacaccgctctttcaactttttagctttatttt |
24345894 |
T |
|
| Q |
115 |
gtgttcaaattttaatatttttatttgnnnnnnntatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattga |
214 |
Q |
| |
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| | ||||| | ||||||||||||||| ||||||||||||||| | ||||||||||| ||| |||||||| ||||||||||| ||||||||||| |
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|
| T |
24345895 |
gcgatcaaactataatatttttatttggaaggaatatcatgttattgatgctgaaagaaatactactaaagaatattaaaacttgaagtacacaaattga |
24345994 |
T |
|
| Q |
215 |
tgttcgtgc---tttcattcattcacat |
239 |
Q |
| |
|
||||| ||| ||||||||||| |||| |
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|
| T |
24345995 |
tgttcctgcacttttcattcattgacat |
24346022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 24358067 - 24358294
Alignment:
| Q |
18 |
gtaatctctaaccttttgtactccttgtgctaggctttattgaatgaattaagttgtt-taagaaa--aaactacttttgcaacttcttagctttatttt |
114 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||| | || || || |||||| ||||||||||||| |
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| T |
24358067 |
gtaaactctagccttttgcactccttgtgctaggctttattgaatgaattaatcagttataaaaaatgacaccgctctttcaactttttagctttatttt |
24358166 |
T |
|
| Q |
115 |
gtgttcaaattttaatatttttatttgnnnnnnntatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattga |
214 |
Q |
| |
|
| | ||||| | ||||||||||||||| ||||||||||||||| | ||||||||||| ||| |||||||| ||||||||||| ||||||||||| |
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| T |
24358167 |
gcgatcaaactataatatttttatttggaaggaatatcatgttattgatgctgaaagaaatactactaaagaatattaaaacttgaagtacacaaattga |
24358266 |
T |
|
| Q |
215 |
tgttcgtgc---tttcattcattcacat |
239 |
Q |
| |
|
||||| ||| ||||||||||| |||| |
|
|
| T |
24358267 |
tgttcctgcacttttcattcattgacat |
24358294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 27980060 - 27980122
Alignment:
| Q |
157 |
tattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgttc |
219 |
Q |
| |
|
||||||| | |||||||||| |||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
27980060 |
tattgatgctgaaagaaataatacttaagaatattaaaacttgaagtacacaaattgatgttc |
27980122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 15046686 - 15046620
Alignment:
| Q |
149 |
tatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgtt |
218 |
Q |
| |
|
||||||||||||||| | |||||||||| | |||||||| ||||||||||| ||||||||||||||| |
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| T |
15046686 |
tatcatgttattgatgccaaaagaaatacta---aagaatattaaaacttgaagtacacaaattgatgtt |
15046620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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