View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2496_low_3 (Length: 418)
Name: NF2496_low_3
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496_low_3 |
 | |
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| [»] scaffold0027 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 62 - 404
Target Start/End: Complemental strand, 34318366 - 34318022
Alignment:
| Q |
62 |
gaagtaacgctaattctaggcaataatagatgtgtggcacggtgcgacattgacgaatcaacggttcatttgttccttcattgagaagtttttggtttcg |
161 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
34318366 |
gaagtaacactaattctaggcaataatagatgtgtggcacggtgcgacattgacgaatcaacggttcatttgttccttcattgtgaagtttttggttccg |
34318267 |
T |
|
| Q |
162 |
tatggcagctcatcaagttttggattgacatcacaggagtcgagcccaacaatattagtgaccacttttttcagtttattcattatacaagtcattcgaa |
261 |
Q |
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| T |
34318266 |
tatggcaactcatcaagttttggattgacatcaaaggagtcgagcccaacaatattagtgaccacttttttcagtttattcattatacaagtcattcgaa |
34318167 |
T |
|
| Q |
262 |
gaagcgtc--ttgtttcttaagcttttatggcttttgtatgtttggctggtttgaaatgaatgcaacaacgggatttttaataacatccaagcctccatt |
359 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
34318166 |
gaagcgtcgattgtttcttaagtttttatggcttttgtatgtttggctggtttggaatgaatgcaacaacgagatttttaataacatccaagcccccatt |
34318067 |
T |
|
| Q |
360 |
gtgcagcttttagatagagttaaatactattcgctttgatggctg |
404 |
Q |
| |
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||||||||||||||||||||||||||| | |||||||| |||||| |
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| T |
34318066 |
gtgcagcttttagatagagttaaataccactcgctttggtggctg |
34318022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 2071395 - 2071342
Alignment:
| Q |
211 |
caatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaa |
264 |
Q |
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| T |
2071395 |
caatattagtgactattttattcagtttattcattgtagaggtcattcgaagaa |
2071342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 89 - 392
Target Start/End: Complemental strand, 33576256 - 33575951
Alignment:
| Q |
89 |
agatgtgtggcacggtgcgacattgacgaatcaacggttcatttgttccttcattgagaagtttttggtttcgtatggcagctcatcaagttttggattg |
188 |
Q |
| |
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|||||||||||| ||||||| ||||||||| ||||||||||||||||||||| || ||||| || | | | |||||||| ||||||| |||||||| |
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| T |
33576256 |
agatgtgtggcagggtgcgaagccgacgaatcagcggttcatttgttccttcattctgatgttttcgggtccttgtggcagctaatcaagtcttggattg |
33576157 |
T |
|
| Q |
189 |
acatcacaggagtcgagcccaacaatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc--ttgtttcttaagctttt |
286 |
Q |
| |
|
||||| |||||| || ||||||||||||||||| |||||||||||||||||||||| | || |||| ||||||||||||| | |||||| ||||||| |
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| T |
33576156 |
gcatcataggagttgaccccaacaatattagtgatcacttttttcagtttattcattgttcaggtcactcgaagaagcgtcgatcgtttctacagctttt |
33576057 |
T |
|
| Q |
287 |
atggcttttgtatgtttggctggtttgaaatgaatgcaacaacgggatttttaataacatccaagcctccattgtgcagcttttagatagagttaaatac |
386 |
Q |
| |
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||||||||||| |||||||| |||||| |||||| || ||| ||||||||| |||| |||| || ||||| ||||||| |||||||||||||||||| |
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| T |
33576056 |
atggcttttgtgtgtttggcaggtttggaatgaacataataacatgatttttaacaacacccaaacccccattatgcagctcttagatagagttaaatac |
33575957 |
T |
|
| Q |
387 |
tattcg |
392 |
Q |
| |
|
||||| |
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|
| T |
33575956 |
cattcg |
33575951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 112 - 386
Target Start/End: Original strand, 33821704 - 33821983
Alignment:
| Q |
112 |
tgacgaatcaacggttcatttgttccttcattgagaagtttttggtttcgtatggcagctcatcaagttttggattgacatcacaggagtcgagcccaac |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || |||||||| | | | |||||||| |||| || ||||||||||||||| ||||| || ||||| |
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| T |
33821704 |
tgacaaatcaacggttcatttgttccttcattgtgatgtttttgggtccttgtggcagctaatcaggtcttggattgacatcactggagtagaccccaat |
33821803 |
T |
|
| Q |
212 |
aatattagt---gaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc--ttgtttcttaagcttttatggcttttgtatgtttggc |
306 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||| |||| |||||| || ||| | |||||| |||||||||||||||||| ||||||| |
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| T |
33821804 |
aatattagtagtgatcacttttttcagtttattcattatacaggtcactcgaagcagggtcgatcgtttctacagcttttatggcttttgtgagtttggc |
33821903 |
T |
|
| Q |
307 |
tggtttgaaatgaatgcaacaacgggatttttaataacatccaagcctccattgtgcagcttttagatagagttaaatac |
386 |
Q |
| |
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|||||| ||||| | || ||| ||||||||||||||||||||| | ||||| | |||||||||||||||||||||||| |
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| T |
33821904 |
aggtttggaatgagcgtaataacaggatttttaataacatccaagtccccattattcagcttttagatagagttaaatac |
33821983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 185 - 404
Target Start/End: Complemental strand, 23898162 - 23897941
Alignment:
| Q |
185 |
attgacatcacaggagtcgagcccaacaatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc--ttgtttcttaagc |
282 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||| | |||||| || |
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| T |
23898162 |
attggcatcacaggagtcgaccccaataatattagtgatcacttttttcagtttattcattgtacaggtcactcgaagaagcgtcgatcgtttctacggc |
23898063 |
T |
|
| Q |
283 |
ttttatggcttttgtatgtttggctggtttgaaatgaatgcaacaacgggatttttaataacatccaagcctccattgtgcagcttttagatagagttaa |
382 |
Q |
| |
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||||||||||||||| |||||||| ||||| ||||| | || ||| ||||||||||||||||||| || ||||| |||| ||||||||||||||||| |
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| T |
23898062 |
ttttatggcttttgtgtgtttggcaagtttggaatgagcgtaataacatgatttttaataacatccaaacccccattatgcaacttttagatagagttaa |
23897963 |
T |
|
| Q |
383 |
atactattcgctttgatggctg |
404 |
Q |
| |
|
|||| | || ||||||||||| |
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| T |
23897962 |
ataccactcattttgatggctg |
23897941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 117 - 386
Target Start/End: Original strand, 7319501 - 7319772
Alignment:
| Q |
117 |
aatcaacggttcatttgttccttcattgagaagtttttggtttcgtatggcagctcatcaagttttggattgacatcacaggagtcgagcccaacaatat |
216 |
Q |
| |
|
|||||||||||||||||||||||| || || |||| || | | | |||||||| |||||| ||||||| | | ||||||||||| ||||| ||||| |
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|
| T |
7319501 |
aatcaacggttcatttgttccttcgctgtgatattttcgggtccttgtggcagctagtcaagtcatggattggccttacaggagtcgaccccaataatat |
7319600 |
T |
|
| Q |
217 |
tagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc--ttgtttcttaagcttttatggcttttgtatgtttggctggtttga |
314 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| | || ||||||||||||| | ||||| | |||||||| ||||||| |||||| | |||||| |
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|
| T |
7319601 |
tagtgatcacttttttcaatttattcattatacaggccactcgaagaagcgtcgatcctttctacaacttttatgacttttgtgtgtttgacaggtttgg |
7319700 |
T |
|
| Q |
315 |
aatgaatgcaacaacgggatttttaataacatccaagcctccattgtgcagcttttagatagagttaaatac |
386 |
Q |
| |
|
||||| || ||| |||||||||| ||||||||| || ||||| |||||||||||||||||||||||||| |
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|
| T |
7319701 |
aatgagcataataacaggatttttaacaacatccaaacccccattatgcagcttttagatagagttaaatac |
7319772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 23898238 - 23898184
Alignment:
| Q |
89 |
agatgtgtggcacggtgcgacattgacgaatcaacggttcatttgttccttcatt |
143 |
Q |
| |
|
|||||||||| | |||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
23898238 |
agatgtgtggtagggtgcgacgccgacgaatcagcggttcatttgttccttcatt |
23898184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 181 - 386
Target Start/End: Complemental strand, 150531 - 150324
Alignment:
| Q |
181 |
ttggattgacatcacaggagtcgagcccaacaatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgt--cttgtttctt |
278 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||| |||| |||| |||||||||||| | |||||| |
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| T |
150531 |
ttggattggcatcacaggagtcgaccccaataatattagtgatcacttttttcaatttattcattgtacaggtcactcgaagaagcgttgatcgtttcta |
150432 |
T |
|
| Q |
279 |
aagcttttatggcttttgtatgtttggctggtttgaaatgaatgcaacaacgggatttttaataacatccaagcctccattgtgcagcttttagatagag |
378 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||| | || ||| |||||||||||||||||||| || ||||| |||| ||||||||||||| |
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|
| T |
150431 |
ccgcttttatggcttttgtgtgtttggcaggttttgaatgagcgtaataacaggatttttaataacatccaaacccccattatgcaacttttagatagag |
150332 |
T |
|
| Q |
379 |
ttaaatac |
386 |
Q |
| |
|
|||||||| |
|
|
| T |
150331 |
ttaaatac |
150324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 150603 - 150549
Alignment:
| Q |
89 |
agatgtgtggcacggtgcgacattgacgaatcaacggttcatttgttccttcatt |
143 |
Q |
| |
|
|||||||||| | |||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
150603 |
agatgtgtggtagggtgcgacgccgacgaatcagcggttcatttgttccttcatt |
150549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 7300435 - 7300382
Alignment:
| Q |
307 |
tggtttgaaatgaatgcaacaacgggatttttaataacatccaagcctccattg |
360 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||||||||||||| || |||||| |
|
|
| T |
7300435 |
tggtttggaatgaatgcaacaacggactatttaataacatccaaacccccattg |
7300382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 31706628 - 31706580
Alignment:
| Q |
210 |
acaatattagtgaccacttttttcagtttattcattatacaagtcattc |
258 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||| ||| ||||||| |
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| T |
31706628 |
acaatattagtgaccatttctttcaatttattcattacacaggtcattc |
31706580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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