View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496_low_5 (Length: 393)
Name: NF2496_low_5
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 126 - 376
Target Start/End: Complemental strand, 48415604 - 48415347
Alignment:
| Q |
126 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgttctg-------tacaatg |
218 |
Q |
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| T |
48415604 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgttctgataactgtacaatg |
48415505 |
T |
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| Q |
219 |
agcccggaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtnnnnnnntatctatcttgacattgtatatgaattaaatccg |
318 |
Q |
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| T |
48415504 |
agcccagaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtaaaaaaatatctatcttgacattgtatatgaattaaatccg |
48415405 |
T |
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| Q |
319 |
ttcacattacggatgtttgtgttggcattttcaggaaagcattcaacaacacggtgct |
376 |
Q |
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| T |
48415404 |
ctcacattacggatgtttgtgttggcattttcaggaaagcattcaacaacacggtgct |
48415347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 48415735 - 48415684
Alignment:
| Q |
1 |
acattattgtaaatcgttacatcgaatgcgaaggatccaatgccagagtatc |
52 |
Q |
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| T |
48415735 |
acattattgtaaatcgttacattgaatgcgaaggatccaatgccagagtatc |
48415684 |
T |
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