View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496_low_9 (Length: 357)
Name: NF2496_low_9
Description: NF2496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 14937795 - 14938111
Alignment:
| Q |
1 |
agtaagatagaatggaggaaagaatatacggagcaagagccaaccttccaggtttatttagcaatctatatttccaagaagcaagtttagattgcatttt |
100 |
Q |
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| T |
14937795 |
agtaagatagaatggaggaaagaatatatggagcaagagccaaccttccaggtttatttagcaatctatatttccaagaagcaagtttagattgcatttt |
14937894 |
T |
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| Q |
101 |
ctctatgacaaaaaggaaaatacttctcttagctctcacactgagaataggaaaaccaaagtacttattatgcgagacagtgtttctaatgccagaaata |
200 |
Q |
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| T |
14937895 |
ctctatgacaaaaaggaaaatacttctcttagctctcacaatgagaataggaaaaccaaagtacttattaagcgagacagtgcttctaatgccagaaata |
14937994 |
T |
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| Q |
201 |
gaagtgagtctattgatttttgcttgaggagtacttgttagactttgac-aatttattttcaaccctcaagccttattgaagcaatcaaacaaatcagcg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14937995 |
gaagtgagtctattgatttttgcttgaggagtacttgttacactttgacaaattaattttcaaccctcaagccttattgaagcaatcaaacaaatcagcg |
14938094 |
T |
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| Q |
300 |
atgaatctaaattgaaa |
316 |
Q |
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| T |
14938095 |
atgaatctaaattgaaa |
14938111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 24132967 - 24133020
Alignment:
| Q |
184 |
ttctaatgccagaaatagaagtgagtctattgatttttgcttgaggagtacttg |
237 |
Q |
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| T |
24132967 |
ttcttatgccagaaatagaagtaagcctattaattttggcttgaggaatacttg |
24133020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 32874050 - 32874114
Alignment:
| Q |
51 |
ggtttatttagcaatctatatttccaagaagcaagtttagattgcattttctctatgacaaaaag |
115 |
Q |
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| T |
32874050 |
ggtttattcaacaacctatgttttcaagaagcaagtatggattgcattttctcaatgataaaaag |
32874114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 35062707 - 35062759
Alignment:
| Q |
51 |
ggtttatttagcaatctatatttccaagaagcaagtttagattgcattttctc |
103 |
Q |
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| T |
35062707 |
ggtttattcagcagtctattcttccaagaagcaagtctatattgcattttctc |
35062759 |
T |
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