View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2497_high_6 (Length: 296)
Name: NF2497_high_6
Description: NF2497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2497_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 47197985 - 47198264
Alignment:
| Q |
7 |
actcagagctagtaaagtggctaatgaggttaagggtcccttcaaggatctcgttaagtcccacaatcgtcctccattgatcattgccatctgtatgcag |
106 |
Q |
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| T |
47197985 |
actcagagctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattgatcattgccatctgtatgcag |
47198084 |
T |
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| Q |
107 |
gtcactactcaataactataatagcattaattattaataatgaatcattttaatgcataatgcagccgaatcaatgttaaaatattaaaccaaatacatg |
206 |
Q |
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| T |
47198085 |
gtcactactcaataactataatagcattaattattaatcatgaatcattttaatgcataatgcagtcgaatcaatgttaaaatattaaaccaaatacata |
47198184 |
T |
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| Q |
207 |
aatttttattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtat |
286 |
Q |
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| T |
47198185 |
aatttttattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtat |
47198264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 47185103 - 47185211
Alignment:
| Q |
7 |
actcagagctagtaaagtggctaatgaggttaagggtcccttcaaggatctcgttaagtcccacaatcgtcctccattgatcattgccatctgtatgcag |
106 |
Q |
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|||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||||||| ||||| ||||| |||||||| ||||||||| |
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| T |
47185103 |
actcagagctagtaaagtggctaatgaggtcaagagccccttcaaggatcttgttaagtcccacaatctccctcctttgataattgccatatgtatgcag |
47185202 |
T |
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| Q |
107 |
gtcactact |
115 |
Q |
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|| |||||| |
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| T |
47185203 |
gtaactact |
47185211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 47185672 - 47185725
Alignment:
| Q |
233 |
aggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtat |
286 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47185672 |
aggtcttccaacaattcaccggcatcaatgcaatcatgttctatgctccagtat |
47185725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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