View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2497_low_2 (Length: 635)
Name: NF2497_low_2
Description: NF2497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2497_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 20 - 625
Target Start/End: Complemental strand, 41658992 - 41658392
Alignment:
| Q |
20 |
gctggtttagatgcagtgatgcagaaaactattgattgaaggagagtgaatcaagtattgttgatctagactctaaagtaaagaattgtcgccgaaggaa |
119 |
Q |
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| T |
41658992 |
gctggtttagatgcagtgatgcagaaaactattgattgaaggagagtgaatcaagtattaatgatctaga-------gtaaagaattgtcgccgaaggaa |
41658900 |
T |
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| Q |
120 |
gcaaaagaagatgctcaattttgtagctgattgacacaaaatgcagtagacttcaatcaagcactttgacaaaatctaaacttttatgaaactattaatc |
219 |
Q |
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| T |
41658899 |
gcaaaagaagatgctcaattttgtagctgattgacacaaaatgcagtagacttcaatcaagcactttggcaaaatctaaacttttatgaaactattaatc |
41658800 |
T |
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| Q |
220 |
ctttatatctattgggataaggatctatagacagttttataatattttggtagctgtgtcaagttttgatag-cgtaagcatatatgatctttcttaatg |
318 |
Q |
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| T |
41658799 |
ctttatatctattgggataaggatctatagacagttttataatattttggtagctgtgtcaagttttgatagacgtaagcatatatgatcttccttaatg |
41658700 |
T |
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| Q |
319 |
ccactataatagctagcatggtggtatatgttatgttcttt-gagattctgacttgtgtggttgtagttgctactattatgttgtgatctttgatattgc |
417 |
Q |
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| T |
41658699 |
ccgctataatagctagcatggtggtatatgttatgttcttttgagattctgacttgtgtggttgtagttgctactattatgttgtgatctttgatattgc |
41658600 |
T |
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| Q |
418 |
acagcagtaattgatattcgatggccccaatcgcagaggccttagacctagcaatttctgctacatacctcagctctgaattatggttgactgcagtctg |
517 |
Q |
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| T |
41658599 |
acagcagtaattgatattccatggccccaatcgcagaggccttagacctagcaatttctgctacatacctcagctctgaattatggttgactgcagtctg |
41658500 |
T |
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| Q |
518 |
cagatcttaatctagaactatagttggggtgatgtggttgtctttcaatgtatgtaaaatgtgattgatatgtgatatgatatatttctacttctgcttt |
617 |
Q |
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| T |
41658499 |
cagatcttaatctagaactatagttgggatgttgtggttgtctttcaatgtatgtaaaatatgattgatatgtgatatgatatatttctacttctgcttt |
41658400 |
T |
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| Q |
618 |
gatctgtg |
625 |
Q |
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| T |
41658399 |
gatctgtg |
41658392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 548 - 623
Target Start/End: Complemental strand, 41657324 - 41657249
Alignment:
| Q |
548 |
gatgtggttgtctttcaatgtatgtaaaatgtgattgatatgtgatatgatatatttctacttctgctttgatctg |
623 |
Q |
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| T |
41657324 |
gatgtggttgtctttctaagtacgttaaatgtgatcgatatgtgatatgatatgtttctacttctgctgtgatctg |
41657249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 511
Target Start/End: Complemental strand, 41657411 - 41657325
Alignment:
| Q |
425 |
taattgatattcgatggccccaatcgcagaggccttagacctagcaatttctgctacatacctcagctctgaattatggttgactgc |
511 |
Q |
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| T |
41657411 |
taattgatattccataaccctaattgcagaggccttagaactagcaatttctgttaccgtgctcagttttgaactatggttgactgc |
41657325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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