View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2497_low_3 (Length: 420)
Name: NF2497_low_3
Description: NF2497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2497_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 28805947 - 28805539
Alignment:
| Q |
1 |
ttatttactttttccctttttgatgatggtaggaggaggaggggagaagaaatgtctgaattctgagctatggcatgcatgtgcggggcccttagtgtcc |
100 |
Q |
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| T |
28805947 |
ttatttcctttttctctttttgatgatggtaggaggaggaggggagaagaaatgtctgaattctgagctatggcatgcatgtgcggggcccttagtgtcc |
28805848 |
T |
|
| Q |
101 |
ctaccaaccgcaggaactcgtgtggtttacttccctcagggtcatagtgagcaggtttttgcttttctattccctacaatgtttcaatctgcttgctatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28805847 |
ctaccaaccgcaggaactcgtgtggtttacttccctcagggtcatagtgagcaggtttttgcttttctattccctacaatgtttcaatctgcttgctatg |
28805748 |
T |
|
| Q |
201 |
gaagataatgaaacctttcttgcaaacttgttttggaaacaattcaatagattctatggatggacattgagttgaatatgttttgattgattccaggtgt |
300 |
Q |
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| T |
28805747 |
gaagataatgaaacctttcttgcaaacttgttttggaaacaattcaatagattctatggatggacattgagttgaacatgttttgattgattccaggtgt |
28805648 |
T |
|
| Q |
301 |
ctgctacaactaaccgcgaaatcgatgggcaaataccaaattaccctagtttgccacctcagttggtttgccagcttcataatgtcacaatgcatgtgag |
400 |
Q |
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| T |
28805647 |
ctgctacaactaaccgagagatcgatgggcaaataccaaattaccctagtttgccacctcagttggtttgccagcttcataatgtcacaatgcatgtgag |
28805548 |
T |
|
| Q |
401 |
tatattcat |
409 |
Q |
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| T |
28805547 |
tatattcat |
28805539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 32498809 - 32498690
Alignment:
| Q |
37 |
aggaggggagaagaaatgtctgaattctgagctatggcatgcatgtgcggggcccttagtgtccctaccaaccgcaggaactcgtgtggtttacttccct |
136 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||||||||||||||||| |
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| T |
32498809 |
aggaggggagaagaagtgtttgaattctgagctatggcatgcatgtgcgggtcccttagtttctctaccaactgcagggactcgtgtggtttacttccct |
32498710 |
T |
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| Q |
137 |
cagggtcatagtgagcaggt |
156 |
Q |
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| T |
32498709 |
caaggtcatagtgagcaggt |
32498690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 288 - 401
Target Start/End: Complemental strand, 32498511 - 32498398
Alignment:
| Q |
288 |
tgattccaggtgtctgctacaactaaccgcgaaatcgatgggcaaataccaaattaccctagtttgccacctcagttggtttgccagcttcataatgtca |
387 |
Q |
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|||||| |||| ||||| ||||| ||| | ||||| |||||||||||||| ||||| ||||||||||| ||||||||| | ||||| ||||||||||| | |
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| T |
32498511 |
tgattctaggtttctgccacaaccaacagagaaattgatgggcaaataccgaattatcctagtttgccgcctcagttgatatgccaacttcataatgtta |
32498412 |
T |
|
| Q |
388 |
caatgcatgtgagt |
401 |
Q |
| |
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|||||||||||||| |
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| T |
32498411 |
caatgcatgtgagt |
32498398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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