View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2497_low_5 (Length: 340)

Name: NF2497_low_5
Description: NF2497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2497_low_5
NF2497_low_5
[»] chr2 (4 HSPs)
chr2 (1-309)||(10196762-10197070)
chr2 (93-174)||(2578087-2578168)
chr2 (93-200)||(3409239-3409346)
chr2 (93-170)||(41332243-41332320)
[»] chr3 (3 HSPs)
chr3 (93-152)||(28242613-28242672)
chr3 (93-177)||(9505172-9505256)
chr3 (109-177)||(46293280-46293348)
[»] chr1 (3 HSPs)
chr1 (93-175)||(44596524-44596606)
chr1 (116-166)||(31335834-31335884)
chr1 (112-200)||(23915667-23915755)
[»] chr5 (3 HSPs)
chr5 (91-179)||(24536010-24536098)
chr5 (93-177)||(1840738-1840822)
chr5 (111-179)||(31021866-31021934)
[»] chr7 (3 HSPs)
chr7 (93-172)||(23227050-23227129)
chr7 (93-172)||(23236203-23236282)
chr7 (93-177)||(10618931-10619015)
[»] chr4 (7 HSPs)
chr4 (93-200)||(27891369-27891475)
chr4 (91-177)||(19455207-19455293)
chr4 (112-177)||(44378255-44378320)
chr4 (112-152)||(5764643-5764683)
chr4 (112-152)||(5766887-5766927)
chr4 (112-152)||(13761829-13761869)
chr4 (111-179)||(25102666-25102734)
[»] chr8 (1 HSPs)
chr8 (93-171)||(9135963-9136041)
[»] scaffold0444 (1 HSPs)
scaffold0444 (112-177)||(837-902)
[»] chr6 (1 HSPs)
chr6 (91-152)||(17507318-17507379)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 10196762 - 10197070
Alignment:
Q  1 tgtgtttgcttggaatgaatttggttgagtatctgaattggttgtttgtgatgtgtttgaatgctatttgaagttagttgtggatttgaattgacaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10196762 tgtgtttgcttggaatgaatttggttgagtatctgaattggttgtttgtgatgtgtttgaatgctatttgaagttagttgtggatttgaattgacaatta 10196861  T
Q  101 acttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaattcgagttttatattgtttgact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10196862 acttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaattcgagttatatattgtttgact 10196961  T
Q  201 aatttgatttacgaatcggatcaacctttgagnnnnnnngtttgaaatgatcatgctttgcctttgggattgggaagcaaggaagatgatggtttttgtt 300  Q
     |||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10196962 catttgatttacgaatcggatcaacctttgagtttttttgtttggaatgatcatgctttgcctttgggattgggaagcaaggaagatgatggtttttgtt 10197061  T
Q  301 tcgattcca 309  Q
    |||||||||    
T  10197062 tcgattcca 10197070  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 2578168 - 2578087
Alignment:
Q  93 gacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagtt 174  Q
    ||||||||||||| | || ||| |||||||||||||| ||||||  |||||||||||||| |  | ||| ||||||||||||    
T  2578168 gacaattaacttgttgaacttgattcatgaatcaaatgagctgaacttgagctgaaaattaaattcgttaaataaatgagtt 2578087  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 3409239 - 3409346
Alignment:
Q  93 gacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaattcgagttttatatt 192  Q
    ||||||||||| | | || |||||||||||| ||||| | ||||  |||||||||||||| || | ||| |||||||||| |||||| ||| | |||||     
T  3409239 gacaattaactcgttgaacttggttcatgaaccaaatgaactgaacttgagctgaaaattaagttcgttaaataaatgagctgaatttgagctgtatata 3409338  T
Q  193 gtttgact 200  Q
    ||| ||||    
T  3409339 gttcgact 3409346  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 41332320 - 41332243
Alignment:
Q  93 gacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatg 170  Q
    ||||||||||||| | || ||||||||| || ||| | || ||| ||||||||||||||| || ||||| ||||||||    
T  41332320 gacaattaacttgttgaacttggttcataaaccaattgagttgaatttgagctgaaaattaagtttgttaaataaatg 41332243  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 28242672 - 28242613
Alignment:
Q  93 gacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaatt 152  Q
    ||||||||||| | | ||||||||||||||| ||||| |||||| |||||||||||||||    
T  28242672 gacaattaactcgttgaatttggttcatgaaccaaatgagctgaatttgagctgaaaatt 28242613  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 9505172 - 9505256
Alignment:
Q  93 gacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaa 177  Q
    ||||||||||| | | || |||||||||||| ||||| || |||  |||||||||||||| || | ||| |||||||||| ||||    
T  9505172 gacaattaactcgttgaacttggttcatgaaccaaatgagttgaacttgagctgaaaattaagttcgttaaataaatgagctgaa 9505256  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 46293280 - 46293348
Alignment:
Q  109 aatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaa 177  Q
    ||||||||||||||| ||||| ||| ||  |||||||||||||| || | ||| | |||||||||||||    
T  46293280 aatttggttcatgaaccaaatgagccgaacttgagctgaaaattaagttcgttaattaaatgagttgaa 46293348  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 44596606 - 44596524
Alignment:
Q  93 gacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttg 175  Q
    ||||||||||| | | ||||||||||||||| ||||| ||||||  |||| ||||||||| || | ||| |||||||||||||    
T  44596606 gacaattaactcgttgaatttggttcatgaaccaaatgagctgaacttgaactgaaaattaagttcgttaaataaatgagttg 44596524  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 31335834 - 31335884
Alignment:
Q  116 ttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaata 166  Q
    |||||||||||| |||| ||| |||||||| ||||||||||||||| ||||    
T  31335834 ttcatgaatcaagtaagttgaatttgagctaaaaattgagcttgttaaata 31335884  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 23915667 - 23915755
Alignment:
Q  112 ttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaattcgagttttatattgtttgact 200  Q
    |||||||||||| ||||| ||||||  || ||||||||||| || |  || ||||||||||||||| | ||||| ||||| ||| ||||    
T  23915667 ttggttcatgaaccaaatgagctgaactttagctgaaaattaagttcattaaataaatgagttgaacttgagttgtatatagttcgact 23915755  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 24536098 - 24536010
Alignment:
Q  91 ttgacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaatt 179  Q
    |||| |||||| ||| | ||| ||||||||||||||||| |||| | |||||||| |||||| || | ||| |||||| ||||||||||    
T  24536098 ttgataattaatttgttgaatctggttcatgaatcaaatgagctaaatttgagctcaaaattaagttcgttaaataaacgagttgaatt 24536010  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 1840738 - 1840822
Alignment:
Q  93 gacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaa 177  Q
    ||||||||||| | | || |||||||||||| ||||| ||||||  |||||||||||||| || | ||  |||||||||| ||||    
T  1840738 gacaattaactcgttgaacttggttcatgaaccaaatgagctgaacttgagctgaaaattaagttcgtgaaataaatgagctgaa 1840822  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 31021934 - 31021866
Alignment:
Q  111 tttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaatt 179  Q
    ||||||||||||| ||||| |||||| ||||||||  ||||| || ||||| | |||||||| ||||||    
T  31021934 tttggttcatgaaccaaatgagctgaatttgagcttgaaattaagtttgttaactaaatgagctgaatt 31021866  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 23227050 - 23227129
Alignment:
Q  93 gacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgag 172  Q
    |||||||| |||| | || ||||| |||||||||||| ||||||  |||||||||||||| || | ||| ||||||||||    
T  23227050 gacaattatcttgttgaacttggtacatgaatcaaatgagctgaacttgagctgaaaattaagttcgttaaataaatgag 23227129  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 23236203 - 23236282
Alignment:
Q  93 gacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgag 172  Q
    |||||||| |||| | || ||||| |||||||||||| ||||||  |||||||||||||| || | ||| ||||||||||    
T  23236203 gacaattatcttgttgaacttggtacatgaatcaaatgagctgaacttgagctgaaaattaagttcgttaaataaatgag 23236282  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 10619015 - 10618931
Alignment:
Q  93 gacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaa 177  Q
    ||||||||||| | | || ||||||||||||  |||| ||||||  |||||||||||||| || | ||| |||||||||| ||||    
T  10619015 gacaattaactcgttgaacttggttcatgaactaaatgagctgaacttgagctgaaaattaagttcgttaaataaatgagctgaa 10618931  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 27891475 - 27891369
Alignment:
Q  93 gacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaattcgagttttatatt 192  Q
    ||||||||||| | | || |||||||||||| ||||| ||||||  |||||||||||||  |  ||||| |||||||||| |||||| || ||||||||     
T  27891475 gacaattaactcgttgaacttggttcatgaa-caaatgagctgaacttgagctgaaaatcaaatttgttaaataaatgagctgaatttgaattttatata 27891377  T
Q  193 gtttgact 200  Q
    ||| ||||    
T  27891376 gttcgact 27891369  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 19455207 - 19455293
Alignment:
Q  91 ttgacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaa 177  Q
    ||||||||||| | | | || |||||||||||||||||| ||||||  ||||| |||||||| || |||||   |||||||||||||    
T  19455207 ttgacaattaattcgttgaacttggttcatgaatcaaatgagctgaacttgagttgaaaattaagtttgttatctaaatgagttgaa 19455293  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 44378320 - 44378255
Alignment:
Q  112 ttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaa 177  Q
    |||||||||||| ||||| || ||| |||| | |||||||| |||| ||| |||||||||||||||    
T  44378320 ttggttcatgaaccaaatgagttgaatttgggttgaaaattaagctcgttaaataaatgagttgaa 44378255  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 5764643 - 5764683
Alignment:
Q  112 ttggttcatgaatcaaataagctgattttgagctgaaaatt 152  Q
    |||||||||||| |||||||| ||| |||||||||||||||    
T  5764643 ttggttcatgaaccaaataagttgagtttgagctgaaaatt 5764683  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 5766887 - 5766927
Alignment:
Q  112 ttggttcatgaatcaaataagctgattttgagctgaaaatt 152  Q
    |||||||||||| |||||||| ||| |||||||||||||||    
T  5766887 ttggttcatgaaccaaataagttgagtttgagctgaaaatt 5766927  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 13761869 - 13761829
Alignment:
Q  112 ttggttcatgaatcaaataagctgattttgagctgaaaatt 152  Q
    |||||||||||| ||||| |||||| |||||||||||||||    
T  13761869 ttggttcatgaaccaaatgagctgaatttgagctgaaaatt 13761829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 25102666 - 25102734
Alignment:
Q  111 tttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaatt 179  Q
    ||||||||||||| ||||| ||| ||  ||||| |||| ||| | |||||| |||||||||||||||||    
T  25102666 tttggttcatgaaccaaatgagccgaaattgagttgaacattaaacttgttaaataaatgagttgaatt 25102734  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 9136041 - 9135963
Alignment:
Q  93 gacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatga 171  Q
    ||||||||||| | | || |||||| ||||||||||||||||||  ||||||||||| || || ||||| | |||||||    
T  9136041 gacaattaactcgttgaacttggtttatgaatcaaataagctgaacttgagctgaaatttaagtttgttaactaaatga 9135963  T

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Target: scaffold0444 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 837 - 902
Alignment:
Q  112 ttggttcatgaatcaaataagctgattttgagctgaaaattgagcttgttcaataaatgagttgaa 177  Q
    |||||||||||| ||||| || ||| |||| | |||||||| |||| ||| |||||||||||||||    
T  837 ttggttcatgaaccaaatgagttgaatttgggttgaaaattaagctcgttaaataaatgagttgaa 902  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 17507318 - 17507379
Alignment:
Q  91 ttgacaattaacttgctaaatttggttcatgaatcaaataagctgattttgagctgaaaatt 152  Q
    |||| |||||||||| | |||||| ||||||||| |||| |||| | |||||||||||||||    
T  17507318 ttgataattaacttgttgaatttgattcatgaattaaatgagctcaatttgagctgaaaatt 17507379  T

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