View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2497_low_6 (Length: 336)

Name: NF2497_low_6
Description: NF2497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2497_low_6
NF2497_low_6
[»] chr8 (6 HSPs)
chr8 (154-269)||(4350781-4350896)
chr8 (246-322)||(4350930-4351006)
chr8 (120-238)||(34141959-34142078)
chr8 (157-194)||(26835707-26835744)
chr8 (157-193)||(13580471-13580507)
chr8 (120-187)||(28376643-28376711)
[»] chr2 (5 HSPs)
chr2 (1-176)||(12630776-12630932)
chr2 (154-235)||(16647944-16648025)
chr2 (118-192)||(40876998-40877073)
chr2 (74-116)||(38551790-38551832)
chr2 (158-238)||(37911367-37911447)
[»] chr6 (4 HSPs)
chr6 (157-225)||(13229255-13229323)
chr6 (120-236)||(12174257-12174374)
chr6 (157-237)||(35122064-35122144)
chr6 (157-195)||(10668991-10669029)
[»] chr4 (6 HSPs)
chr4 (157-237)||(23869983-23870063)
chr4 (156-237)||(29118407-29118488)
chr4 (137-196)||(48653268-48653327)
chr4 (154-187)||(25790449-25790482)
chr4 (159-235)||(3643259-3643334)
chr4 (154-233)||(55236220-55236300)
[»] chr5 (3 HSPs)
chr5 (156-237)||(3193634-3193715)
chr5 (157-196)||(12263761-12263800)
chr5 (120-187)||(16570571-16570639)
[»] chr7 (3 HSPs)
chr7 (157-238)||(15134564-15134645)
chr7 (157-195)||(30095873-30095911)
chr7 (157-237)||(21828097-21828177)
[»] chr3 (2 HSPs)
chr3 (154-195)||(11383570-11383610)
chr3 (154-194)||(27541178-27541218)
[»] chr1 (4 HSPs)
chr1 (117-193)||(20756663-20756738)
chr1 (154-234)||(22667689-22667769)
chr1 (157-237)||(23898008-23898088)
chr1 (120-234)||(1240366-1240481)
[»] scaffold0777 (1 HSPs)
scaffold0777 (156-234)||(5785-5863)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 154 - 269
Target Start/End: Original strand, 4350781 - 4350896
Alignment:
Q  154 aaataaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccacccctgaacacatccaaaatat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4350781 aaataaaaataataattttggtgcctctaaaaaagtggtgcccagggctaccgcccctcgtgcccgccctcagggccacccctgaacacatccaaaatat 4350880  T
Q  254 cttaaatgtcatgcaa 269  Q
    ||||||||||||||||    
T  4350881 cttaaatgtcatgcaa 4350896  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 4350930 - 4351006
Alignment:
Q  246 caaaatatcttaaatgtcatgcaatatgatgatattctcaccaatggaaaaaatgaaagctactcgtgtccctatgc 322  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4350930 caaaatatcttaaatatcatacaatatgatgatattctcaccaatggaaaaaatgaaagctactcgtgtccctatgc 4351006  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 34142078 - 34141959
Alignment:
Q  120 ttaaaaagaaatataagtatatc-taccaacaaccaaataaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgccc 218  Q
    |||||||||||||||  |||||  ||| ||| || |||||||||||||| |||||||||| |||| |||||||||||   |||| |||| ||||| |||     
T  34142078 ttaaaaagaaatatatctatatagtactaactactaaataaaaataatagttttggtgcccctaacaaagtggtgccctgggctgccgctcctcgcgcct 34141979  T
Q  219 gccctcaaggccacccctga 238  Q
    ||||||| ||||||||||||    
T  34141978 gccctcagggccacccctga 34141959  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 26835707 - 26835744
Alignment:
Q  157 taaaaataataattttggtgcctctaaaaaagtggtgc 194  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  26835707 taaaaataataattttggtgcccctaaaaaaatggtgc 26835744  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 13580471 - 13580507
Alignment:
Q  157 taaaaataataattttggtgcctctaaaaaagtggtg 193  Q
    |||||||||||||||||||||| |||||||| |||||    
T  13580471 taaaaataataattttggtgcccctaaaaaaatggtg 13580507  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 28376711 - 28376643
Alignment:
Q  120 ttaaaaagaaatataagtatatc-taccaacaaccaaataaaaataataattttggtgcctctaaaaaa 187  Q
    |||||||||||||||  |||||  ||| ||| || || |||||||||||||||||||||| ||||||||    
T  28376711 ttaaaaagaaatatatctatatagtactaactactaagtaaaaataataattttggtgccgctaaaaaa 28376643  T

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Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 12630776 - 12630932
Alignment:
Q  1 atcaaaagagcgttttattgtcctaggtggatcaataaagttctcttttaaaatccacttgtgttgctttggcggtattgacttgaaatttgtgagtgtg 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||     |||    
T  12630776 atcaaaagagtgttttattgtcctaggtggatcaataaagttctcttttaaaaaccacttgggttgctttggtggtattgacttgaaatttg-----gtg 12630870  T
Q  101 ctccttcttaaggtctcagttaaaaagaaatataagtatatctaccaacaaccaaataaaaataataattttggtg 176  Q
    | |||           ||   ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  12630871 cccct-----------ca---aaaaagaaatataggtatatctaccaacaaccaagtaaaaataataattttggtg 12630932  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 16647944 - 16648025
Alignment:
Q  154 aaataaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccacccc 235  Q
    |||||||||||||||||||| |||| |||||||| |||||||   || | |||||||||||||||||||||| |||||||||    
T  16647944 aaataaaaataataattttgatgcccctaaaaaaatggtgccctgggttgccgcccctcgtgcccgccctcacggccacccc 16648025  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 40876998 - 40877073
Alignment:
Q  118 agttaaaaagaaatataagtatatc-taccaacaaccaaataaaaataataattttggtgcctctaaaaaagtggt 192  Q
    |||||||||||||||||  |||||  ||| ||| ||||| |||||||||||||||||||| | |||||||| ||||    
T  40876998 agttaaaaagaaatatatttatataatactaactaccaagtaaaaataataattttggtgtccctaaaaaattggt 40877073  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 38551790 - 38551832
Alignment:
Q  74 ggtattgacttgaaatttgtgagtgtgctccttcttaaggtct 116  Q
    |||||||| |||||||||| |||||||||| ||||||||||||    
T  38551790 ggtattgatttgaaatttgggagtgtgctctttcttaaggtct 38551832  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 37911447 - 37911367
Alignment:
Q  158 aaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccacccctga 238  Q
    ||||||||||||||||||||| ||||| || ||||| |   |||| |||||||||  | |||| |||| ||||||||||||    
T  37911447 aaaaataataattttggtgcccctaaataaatggtgtcctgggctgccgcccctcaaggccgcgctcagggccacccctga 37911367  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 13229323 - 13229255
Alignment:
Q  157 taaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctca 225  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||| ||||||||||||    
T  13229323 taaaaataataattttggtgcctctaaaaaaatggtgccttgggctgccgcccctcctgcccgccctca 13229255  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 12174374 - 12174257
Alignment:
Q  120 ttaaaaagaaatataagtatatc-taccaacaaccaaataaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgccc 218  Q
    |||||||||||||||  |||||  ||| ||| || || ||||||||||||||||||||||||| ||||| |||||||  ||| ||| ||||||| ||||     
T  12174374 ttaaaaagaaatatatctatatagtactaactactaagtaaaaataataattttggtgcctcttaaaaaatggtgccctaggttactgcccctcctgcct 12174275  T
Q  219 gccctcaaggccacccct 236  Q
    ||||||| ||||||||||    
T  12174274 gccctcagggccacccct 12174257  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 35122064 - 35122144
Alignment:
Q  157 taaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccacccctg 237  Q
    |||||||||||||||||||||| ||||  || ||||||||   ||| |||||||||  ||||||||||| ||| |||||||    
T  35122064 taaaaataataattttggtgcccctaattaaatggtgccttgtgctgccgcccctcaagcccgccctcagggctacccctg 35122144  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 10668991 - 10669029
Alignment:
Q  157 taaaaataataattttggtgcctctaaaaaagtggtgcc 195  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  10668991 taaaaataataattttggtgcccctaaaaaaatggtgcc 10669029  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 23870063 - 23869983
Alignment:
Q  157 taaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccacccctg 237  Q
    |||||||||||||||||||||| ||||||||||||||||   ||||  ||||||||| ||||||||||| |||||||||||    
T  23870063 taaaaataataattttggtgcccctaaaaaagtggtgccctgggctgtcgcccctcgagcccgccctcagggccacccctg 23869983  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 29118488 - 29118407
Alignment:
Q  156 ataaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccacccctg 237  Q
    ||||||||||||||||||||||| | | |||| |||||||    ||| || ||||||| ||||||||||| |||||||||||    
T  29118488 ataaaaataataattttggtgccccaataaaaatggtgccctgagctcccacccctcgagcccgccctcagggccacccctg 29118407  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 48653327 - 48653268
Alignment:
Q  137 tatatctaccaacaaccaaataaaaataataattttggtgcctctaaaaaagtggtgcct 196  Q
    ||||| ||| ||||||||| ||||||||||||||||||| || || ||||| ||||||||    
T  48653327 tatatttacaaacaaccaagtaaaaataataattttggttccacttaaaaaatggtgcct 48653268  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 25790482 - 25790449
Alignment:
Q  154 aaataaaaataataattttggtgcctctaaaaaa 187  Q
    ||||||||||||||||||||||||| ||||||||    
T  25790482 aaataaaaataataattttggtgcccctaaaaaa 25790449  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 3643259 - 3643334
Alignment:
Q  159 aaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccacccc 235  Q
    ||||||||||||||| || |  ||||||| |||||||   |||||||||||||| ||||| |||||| |||||||||    
T  3643259 aaaataataattttgatgtccttaaaaaa-tggtgccatgggctaccgcccctcctgcccaccctcagggccacccc 3643334  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 55236300 - 55236220
Alignment:
Q  154 aaataaaaataataattttggtgcctctaaaaaag-tggtgcctcaggctaccgcccctcgtgcccgccctcaaggccacc 233  Q
    |||||||||||||||||||| ||||  |||||||  ||||| |   |||| | |||||||| |||||||||||||||||||    
T  55236300 aaataaaaataataattttgatgcccttaaaaaaaatggtgtcctgggctgctgcccctcgcgcccgccctcaaggccacc 55236220  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 3193634 - 3193715
Alignment:
Q  156 ataaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccacccctg 237  Q
    |||||||||||||||||||||||  ||  ||| |||||||   |||| |||||||||| ||||||||||| |||||||||||    
T  3193634 ataaaaataataattttggtgcccttatgaaaatggtgccctgggctcccgcccctcgagcccgccctcagggccacccctg 3193715  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 12263761 - 12263800
Alignment:
Q  157 taaaaataataattttggtgcctctaaaaaagtggtgcct 196  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  12263761 taaaaataataattttggtgcccctaaaaaaatggtgcct 12263800  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 16570571 - 16570639
Alignment:
Q  120 ttaaaaagaaatataagtatatc-taccaacaaccaaataaaaataataattttggtgcctctaaaaaa 187  Q
    |||||||||||||||  |||||  ||||||| |  || ||||||||||||||||| |||||||||||||    
T  16570571 ttaaaaagaaatatatctatatggtaccaactaataagtaaaaataataattttgatgcctctaaaaaa 16570639  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 15134564 - 15134645
Alignment:
Q  157 taaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccacccctga 238  Q
    |||||||||||||||||||||| |||||||  || ||||   |||| ||||||||   ||||||||||| ||||||||||||    
T  15134564 taaaaataataattttggtgcccctaaaaatttgatgccctgggctgccgccccttaagcccgccctcagggccacccctga 15134645  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 30095873 - 30095911
Alignment:
Q  157 taaaaataataattttggtgcctctaaaaaagtggtgcc 195  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  30095873 taaaaataataattttggtgcccctaaaaaaatggtgcc 30095911  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 21828177 - 21828097
Alignment:
Q  157 taaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccacccctg 237  Q
    ||||||||||||||||  |||| ||||| || |||||||   |||| | |||||||| |||| |||||| |||||||||||    
T  21828177 taaaaataataatttttatgcccctaaagaaatggtgccctgggctgcagcccctcgcgccctccctcagggccacccctg 21828097  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 11383610 - 11383570
Alignment:
Q  154 aaataaaaataataattttggtgcctctaaaaaagtggtgcc 195  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  11383610 aaataaaaataataattttggtgcc-ctaaaaaagtggtgcc 11383570  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 27541178 - 27541218
Alignment:
Q  154 aaataaaaataataattttggtgcctctaaaaaagtggtgc 194  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  27541178 aaataaaaataataattttgatgcccctaaaaaagtggtgc 27541218  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 20756738 - 20756663
Alignment:
Q  117 cagttaaaaagaaatataagtatatctaccaacaaccaaataaaaataataattttggtgcctctaaaaaagtggtg 193  Q
    ||||||||||||||||||  ||||| ||| ||| ||| | ||||||||||||||||| |||| |||||||| |||||    
T  20756738 cagttaaaaagaaatatatttatatgtactaaccaccgagtaaaaataataattttgatgcc-ctaaaaaattggtg 20756663  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 22667689 - 22667769
Alignment:
Q  154 aaataaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccaccc 234  Q
    ||||||||||||||||||| ||||| ||||| || |||||||  ||||| |||||||||   ||||||||||  |||||||    
T  22667689 aaataaaaataataatttttgtgcccctaaataaatggtgccctaggctgccgcccctcaaacccgccctcagagccaccc 22667769  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 23898008 - 23898088
Alignment:
Q  157 taaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccacccctg 237  Q
    ||||||| |||||||||||||| |||||||| |||| ||   |||| |||||||||  |||| |||||| |||||||||||    
T  23898008 taaaaatgataattttggtgcccctaaaaaaatggttccctgggctgccgcccctcaagcccaccctcagggccacccctg 23898088  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 1240481 - 1240366
Alignment:
Q  120 ttaaaaagaaatataagtatatc-taccaacaaccaaataaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgccc 218  Q
    |||||||||||||||  |||||  ||| ||| || || |||||||||||||||| ||||| |||||||| ||||| |   |||| |||||||||   |||    
T  1240481 ttaaaaagaaatatatttatatagtactaactactaagtaaaaataataattttagtgcccctaaaaaaatggtgtcctgggctgccgcccctccatccc 1240382  T
Q  219 gccctcaaggccaccc 234  Q
    ||||||| ||||||||    
T  1240381 gccctcagggccaccc 1240366  T

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Target: scaffold0777 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 5863 - 5785
Alignment:
Q  156 ataaaaataataattttggtgcctctaaaaaagtggtgcctcaggctaccgcccctcgtgcccgccctcaaggccaccc 234  Q
    |||||||||||||||||||||||  ||  ||  ||||||||  |||| |||||||||  ||||||||||| ||||||||    
T  5863 ataaaaataataattttggtgcccatatgaagatggtgccttgggctcccgcccctctagcccgccctcagggccaccc 5785  T

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