View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2497_low_7 (Length: 296)
Name: NF2497_low_7
Description: NF2497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2497_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 13467871 - 13467964
Alignment:
| Q |
195 |
atccaaaacaacaaaatccaagtagtcacttaacctatgttcatgtatgtcccttgacaattgctattttcaaaccctatcagtcagttcatat |
288 |
Q |
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| T |
13467871 |
atccaaaacaacaaaatccaactagtgacttaacctatgttcatgtatgtcccttgacaattgctattttcaaaccatatcagtcagttcatat |
13467964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 13471843 - 13471991
Alignment:
| Q |
1 |
aaattcaagtattggctaactaacaaatatgcaattcaatgttttaaaagggatcgaaacaaaataaatctttgatgatcacagagttcatagagcacaa |
100 |
Q |
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| T |
13471843 |
aaattcatgtcttggctaactaacaaatatgcaattcaatttcttaaaagtgatcaaagcaaaattaatcattgataatcacagagctcatagagcacaa |
13471942 |
T |
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| Q |
101 |
tatgtcactcaccaaactagttgcaaaacctatgaacatatacacttcaa |
150 |
Q |
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| T |
13471943 |
tatat-gcttaccaaactagttgcaaaacctgtgagcagatatacttcaa |
13471991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 13472021 - 13472058
Alignment:
| Q |
248 |
ttgacaattgctattttcaaaccctatcagtcagttca |
285 |
Q |
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| T |
13472021 |
ttgacaattgctattttcaaatcctatcagtcagttca |
13472058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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