View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2497_low_9 (Length: 239)

Name: NF2497_low_9
Description: NF2497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2497_low_9
NF2497_low_9
[»] chr4 (16 HSPs)
chr4 (23-224)||(23873799-23874000)
chr4 (23-224)||(8487304-8487505)
chr4 (23-206)||(55298239-55298422)
chr4 (23-224)||(2631014-2631215)
chr4 (23-217)||(20673325-20673519)
chr4 (23-156)||(12776599-12776731)
chr4 (23-132)||(33313015-33313124)
chr4 (23-210)||(7663575-7663762)
chr4 (23-202)||(23279223-23279402)
chr4 (23-210)||(47540541-47540728)
chr4 (23-205)||(8655415-8655597)
chr4 (126-210)||(3130316-3130400)
chr4 (23-108)||(25875129-25875214)
chr4 (23-178)||(1121013-1121168)
chr4 (23-74)||(5817654-5817705)
chr4 (57-105)||(4641116-4641164)
[»] chr1 (16 HSPs)
chr1 (23-224)||(32353620-32353821)
chr1 (23-224)||(48073755-48073956)
chr1 (23-224)||(38231303-38231504)
chr1 (23-224)||(3692243-3692444)
chr1 (23-213)||(37530180-37530370)
chr1 (23-224)||(14119380-14119582)
chr1 (23-210)||(36928783-36928970)
chr1 (23-210)||(21527777-21527964)
chr1 (23-210)||(4644629-4644816)
chr1 (42-210)||(36305419-36305587)
chr1 (23-210)||(14365962-14366148)
chr1 (23-210)||(47115904-47116091)
chr1 (23-210)||(48266055-48266242)
chr1 (23-74)||(9528226-9528277)
chr1 (57-204)||(30970951-30971098)
chr1 (23-102)||(25639908-25639987)
[»] chr3 (15 HSPs)
chr3 (23-224)||(23601389-23601590)
chr3 (23-224)||(7146657-7146858)
chr3 (23-224)||(6176801-6177002)
chr3 (23-224)||(2813823-2814024)
chr3 (23-224)||(29309023-29309225)
chr3 (23-224)||(25873435-25873636)
chr3 (39-205)||(9378729-9378895)
chr3 (23-210)||(30167682-30167869)
chr3 (23-211)||(28675265-28675453)
chr3 (23-210)||(49732270-49732457)
chr3 (126-210)||(13448197-13448281)
chr3 (123-190)||(9163486-9163553)
chr3 (23-210)||(24227431-24227617)
chr3 (23-74)||(32004596-32004647)
chr3 (123-211)||(19824131-19824219)
[»] chr2 (11 HSPs)
chr2 (23-224)||(33547488-33547689)
chr2 (23-224)||(43627114-43627316)
chr2 (23-224)||(13549740-13549941)
chr2 (23-223)||(9949588-9949788)
chr2 (23-196)||(26681497-26681670)
chr2 (23-224)||(22052243-22052444)
chr2 (23-189)||(31594170-31594336)
chr2 (23-184)||(35694249-35694410)
chr2 (39-212)||(31085972-31086145)
chr2 (23-210)||(45421134-45421321)
chr2 (57-204)||(31774334-31774481)
[»] chr7 (14 HSPs)
chr7 (27-224)||(13439673-13439870)
chr7 (26-224)||(28326975-28327173)
chr7 (29-224)||(30385822-30386016)
chr7 (23-212)||(45235566-45235755)
chr7 (23-167)||(3632419-3632561)
chr7 (90-224)||(45942534-45942668)
chr7 (23-211)||(12379061-12379249)
chr7 (44-212)||(3104540-3104708)
chr7 (27-210)||(15654042-15654225)
chr7 (23-210)||(46623320-46623507)
chr7 (25-201)||(43104929-43105105)
chr7 (23-78)||(21277520-21277575)
chr7 (23-74)||(9546353-9546404)
chr7 (123-211)||(5020908-5020996)
[»] chr6 (15 HSPs)
chr6 (23-217)||(23347796-23347990)
chr6 (23-224)||(15673441-15673642)
chr6 (23-224)||(13755081-13755282)
chr6 (23-224)||(8873149-8873350)
chr6 (25-224)||(25317472-25317671)
chr6 (25-224)||(26204966-26205165)
chr6 (23-224)||(19348890-19349082)
chr6 (126-218)||(1682765-1682857)
chr6 (23-210)||(33629714-33629900)
chr6 (23-211)||(19256661-19256849)
chr6 (131-211)||(4406736-4406816)
chr6 (123-211)||(4474414-4474502)
chr6 (144-184)||(14528110-14528150)
chr6 (131-211)||(33745819-33745899)
chr6 (144-181)||(14532836-14532873)
[»] chr8 (10 HSPs)
chr8 (23-224)||(2871807-2872007)
chr8 (23-224)||(16421332-16421533)
chr8 (23-202)||(412711-412889)
chr8 (23-210)||(7451968-7452155)
chr8 (24-127)||(35405361-35405464)
chr8 (125-195)||(30501686-30501756)
chr8 (23-208)||(19385049-19385234)
chr8 (23-78)||(12218486-12218541)
chr8 (161-224)||(35405459-35405522)
chr8 (131-211)||(7555171-7555251)
[»] chr5 (8 HSPs)
chr5 (23-224)||(6264521-6264722)
chr5 (23-224)||(32917933-32918134)
chr5 (23-182)||(34858058-34858217)
chr5 (23-224)||(34480572-34480773)
chr5 (23-224)||(15499969-15500170)
chr5 (23-210)||(10487243-10487430)
chr5 (39-211)||(587148-587320)
chr5 (144-211)||(31862330-31862397)
[»] scaffold0287 (1 HSPs)
scaffold0287 (23-167)||(13524-13666)
[»] scaffold0418 (1 HSPs)
scaffold0418 (23-210)||(7291-7478)
[»] scaffold0029 (1 HSPs)
scaffold0029 (23-208)||(134975-135160)
[»] scaffold0002 (2 HSPs)
scaffold0002 (23-208)||(312802-312987)
scaffold0002 (23-208)||(328256-328441)
[»] scaffold0220 (1 HSPs)
scaffold0220 (23-87)||(22673-22737)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 23874000 - 23873799
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||     
T  23874000 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaatcttatcaagtaaacaggggatgggggtc 23873901  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23873900 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 23873801  T
Q  223 ct 224  Q
    ||    
T  23873800 ct 23873799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 8487505 - 8487304
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  8487505 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaatcttatctaataaacaagggatgggggta 8487406  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| |||| ||||    
T  8487405 acaacatgattaaacatacggttattacgttcagtccaaacaacccaggcacataaaagccatattagttgcataaaagaacgtctagcaacaccaccac 8487306  T
Q  223 ct 224  Q
    ||    
T  8487305 ct 8487304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 55298239 - 55298422
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||| ||||||    
T  55298239 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaacttaatcttatcaagtaaacaggggataggggta 55298338  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55298339 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgt 55298422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 2631014 - 2631215
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  2631014 ccaccactgctgagtcctaaaaacaaaggtagcttttttagctttcaaccaacctagagacagcagcttaatcttatctagtaaacaagggatgggggta 2631113  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||||||||||||||| |||||| ||||| |||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  2631114 acaacatgattaaacaaacggttgttacgctcattccacacaacccatgcacatagaagccatattagttgcataaaagaacgtctagcagcaccaccac 2631213  T
Q  223 ct 224  Q
    ||    
T  2631214 ct 2631215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 20673325 - 20673519
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||||||||||||||||| || ||||||||||||  ||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  20673325 ccaccactgctgagtcccaaaaacaaaggaagcttttttagctttataccaacctagagacagcagcttaatcttatctagtaaacaagggatgggggta 20673424  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacc 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||    
T  20673425 acaacatgattaaacatacggttattatgttcattccaaacaacctaggcacatagaagccatattagttgcataaaagaacgtctagcaacacc 20673519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 12776731 - 12776599
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||    
T  12776731 ccaccactgctgagtcccaaaaacaaaggtagctcttttagctttcaaccaacctagagacagcagcttaatcttatctagtaaacaagggat-ggggta 12776633  T
Q  123 acaacatgattaaacatacggttattacgttcat 156  Q
    ||||||||||||||||||||||||||||||||||    
T  12776632 acaacatgattaaacatacggttattacgttcat 12776599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 33313015 - 33313124
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||    
T  33313015 ccaccactgctgagtcccaaaaacaaaagtaacttttttaactttcaaccaacctaaagacagcagcttaatcttatctagtaaacaagggatgggagta 33313114  T
Q  123 acaacatgat 132  Q
    ||||||||||    
T  33313115 acaacatgat 33313124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 7663762 - 7663575
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| || || ||||||||||| |||| |||| ||||||||||||||||||  || |||| ||||| ||| ||||  ||||  || ||| | ||     
T  7663762 ccaccactgatgggtaccaaaaacaaaagtagcttttctagctttcaaccaacctaaggacaacatcttaaccttgtctaacaaacggggaatgagagtt 7663663  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| |||||||| ||| ||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||    
T  7663662 attacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagttgcataaaagaacgtctag 7663575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 23279223 - 23279402
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| || || || |||||||| |||| ||||||| |||| | ||| |||| || ||||| ||||| ||| |||| |||||  |||||||| |||    
T  23279223 ccaccactgttgggtaccgaaaacaaaagtagcttttttaccttttagccaccctaaaggaaacatcttaaccttgtctaataaacgggggatgggagta 23279322  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaaga 202  Q
    ||||||| |||||||| ||| ||||| ||||| ||||| ||||||||  ||||||||||||| || ||||||||||||||    
T  23279323 acaacattattaaacagacgattatttcgttcgttccacacaacccacacacaaagaagccatataagttgcataaaaga 23279402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 47540541 - 47540728
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||| ||||| |||| |||||||||||||||||||  ||  || |||| ||| | ||| ||||  ||||  |  ||| | ||     
T  47540541 ccaccactgctgagtaccaaacacaaaagtagcttttttagctttcaaccaagttaaggacaacatcttgaccttgtctaacaaacgggaaatgagagtt 47540640  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| |||||||| ||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||    
T  47540641 attacattattaaacagacgattatttcgttcattccacacaacccaggcacagagaagccaaataagttgcataaaagaacgtctag 47540728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 8655597 - 8655415
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||| |||  || |||| ||| | ||||||||  ||||  || ||||| ||     
T  8655597 ccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatcttgaccttatctaacaaacggggaatgggagtt 8655498  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacg 205  Q
    |  |||| ||||||||  || ||||| || |||||||| |||||||||||||| |||||||| || |||||||||||||||||    
T  8655497 attacattattaaacaggcgattatttcgctcattccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 8655415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 3130400 - 3130316
Alignment:
Q  126 acatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |||| |||||||| ||| |||||  |||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  3130400 acattattaaacagacgattattttgttcattccacacaacccaggcacaaagaagccaaataagttgcataaaagaacgtctag 3130316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 25875214 - 25875129
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaac 108  Q
    ||||||||| || || |||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||| ||| |||| |||||    
T  25875214 ccaccactgatgcgtgccaaaaacaaaggtagtttttttagctttcaaccaacctaaagacaacatcttaaccttgtctaataaac 25875129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 1121168 - 1121013
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| || || |||||||||||| ||| |||||||  |||||| |||||||  || |||| ||| | ||| ||||  ||||  |||||| | ||     
T  1121168 ccaccactgttgggtaccaaaaacaaagatagcttttttaattttcaatcaacctaaggacaacatctttaccttgtctaacaaacgggggatgtgagtt 1121069  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaag 178  Q
    |  |||| |||||||| ||| ||||| ||||||||||| |||| ||||||||||||    
T  1121068 attacattattaaacagacgattatttcgttcattccacacaatccaggcacaaag 1121013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 5817705 - 5817654
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaa 74  Q
    ||||||||||||||| ||||| ||||| |||| |||||||||||||||||||    
T  5817705 ccaccactgctgagtaccaaacacaaaagtagtttttttagctttcaaccaa 5817654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 4641164 - 4641116
Alignment:
Q  57 tttttagctttcaaccaacctagagaaaacagcttaatcttatctagta 105  Q
    ||||||||||||||||| |||||||| ||||  |||| |||||||||||    
T  4641164 tttttagctttcaaccaccctagagataacaatttaaccttatctagta 4641116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 32353821 - 32353620
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  32353821 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaatcttatcaagtaaacaagggatgggggta 32353722  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32353721 acaacataattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcaccaccac 32353622  T
Q  223 ct 224  Q
    ||    
T  32353621 ct 32353620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 48073956 - 48073755
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| |||||||| ||||||||||||    
T  48073956 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaaccttatcaagtaaacaggggatgggggta 48073857  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  48073856 acaacgtgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctaacagcaccaccac 48073757  T
Q  223 ct 224  Q
    ||    
T  48073756 ct 48073755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 38231303 - 38231504
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38231303 ccaccactgatgagtcccaaaaacgaaggtagcttttttagctttcaaccaacctagagacaacagcttaatcttatctagtaaacaagggatgggggta 38231402  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||| |||| ||||    
T  38231403 acaacatgattaaacatacggttattacgttcattccaaacaactcaggcacatagaagtcatattagttgcataaaagaacgtctagcaacaccaccac 38231502  T
Q  223 ct 224  Q
    ||    
T  38231503 ct 38231504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 3692243 - 3692444
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  3692243 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacagcagcttaatcttatctagtaaacaagggatgggggta 3692342  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||||||||||||||| ||||||  |||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  3692343 acaacatgattaaacaaacggttgctacgctcattccacacaacccaggcacatagaagccatattagttgcataaaagaacgtctagcagcaccaccac 3692442  T
Q  223 ct 224  Q
    ||    
T  3692443 ct 3692444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 37530180 - 37530370
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||| | || ||||| |||||| |||||||||||||||||||||    
T  37530180 ccaccactgctgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaacttaaccttatcaagtaaacaagggatgggggta 37530279  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcag 213  Q
    |||||||||||||||| ||| |||||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  37530280 acaacatgattaaacaaacgattattaagttcattccaaacaacccagacacatagaagccatattagttgcataaaagaacgtctagcag 37530370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 14119380 - 14119582
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctaga-gaaaacagcttaatcttatctagtaaacaagggatgggggt 121  Q
    |||||||||||||||  | ||||||||||||  |||||||||||||| |||||||| | || |||| |||||||||||||||||||||||||| ||||||    
T  14119380 ccaccactgctgagtttcgaaaacaaaggtaacttttttagctttcagccaacctaaaagacaacatcttaatcttatctagtaaacaagggacgggggt 14119479  T
Q  122 aacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctcca 221  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||| | |||||| ||||||||||||||||| ||||||||| |||| |||    
T  14119480 aacaacatgattaaacagacgattatttcgttcattccaaacaacccagacacataaaagccatattagttgcataaaagaccgtctagcaacaccacca 14119579  T
Q  222 cct 224  Q
    |||    
T  14119580 cct 14119582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 36928783 - 36928970
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| || || |||||||||||| ||| |||||||||||||||||||||||  || |||| ||| | ||| ||||  |||| ||||||||| ||     
T  36928783 ccaccactgttgggtaccaaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatctttaccttgtctaacaaacgagggatgggagtt 36928882  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    | ||||| |||||||| ||| ||||| ||||||||||| |||||||| |||||||| ||||| || ||||||||||||||||||||||    
T  36928883 ataacattattaaacagacgattatttcgttcattccacacaacccaagcacaaagtagccaaataagttgcataaaagaacgtctag 36928970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 21527777 - 21527964
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||| |||  || |||| ||| | ||||||||  ||||  || ||||| ||     
T  21527777 ccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggataacatcttgaccttatctaacaaacggggaatgggagtt 21527876  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| ||||||||  || ||||| || |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||    
T  21527877 attacattattaaacagtcgattatttcgctcattccacacaacccaggcacagagaagccaaataagttgcataaaagaacgtctag 21527964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 4644629 - 4644816
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||| ||||| |||| |||||| ||||||||||||||||  || |||| ||| | ||| ||||  ||||  || ||||  ||     
T  4644629 ccaccactgctgagtaccaaacacaaaagtagctttttttgctttcaaccaacctaaggacaacatcttgaccttgtctaacaaactgggaatggaagtt 4644728  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| |||||||| | | ||||| ||||||||||| |||||||||||||| |||||||| |  ||||||||||||||||||||||    
T  4644729 attacattattaaacagatgattatttcgttcattccacacaacccaggcacagagaagccaaacaagttgcataaaagaacgtctag 4644816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 36305419 - 36305587
Alignment:
Q  42 aaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaacaacatgattaaacatac 141  Q
    ||||||||| ||| |||||||||||||||||||||||  || |||| ||| | ||| ||||  ||||   | ||||| || |  |||| |||||||| ||    
T  36305419 aaaacaaagatagcttttttagctttcaaccaacctaaggacaacatctttaccttgtctaacaaacggagaatgggagttattacattattaaacagac 36305518  T
Q  142 ggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    | ||||| ||||||||||| ||||||||| ||||||| ||||| || ||||||||||||||||||||||    
T  36305519 gattatttcgttcattccacacaacccagacacaaagtagccatataagttgcataaaagaacgtctag 36305587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 14366148 - 14365962
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||| |||||  ||| ||||||||||||||||||| |||  || |||| ||| | ||| ||||  ||||  || ||| | ||     
T  14366148 ccaccactgctgagtaccaaacacaaaa-tagcttttttagctttcaaccaagctaaggacaacatcttgaccttgtctaacaaacggggaatgagagtt 14366050  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| |||||||| ||| ||||| || |||||||| |||||||| ||||| |||||| | || ||||||||||||||||||||||    
T  14366049 attacattattaaacagacgattatttcgctcattccacacaacccaagcacagagaagctaaataagttgcataaaagaacgtctag 14365962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 47115904 - 47116091
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||| || |||||| ||||  ||| ||||||||||||||||||  |||  || |||| ||| | ||| |||   ||||| || ||| | ||     
T  47115904 ccaccactgctgggtaccaaaagcaaaaatagcttttttagctttcaaccattctaaggacaacatctttaccttgtctgacaaacagggaatgagagtt 47116003  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| |||||||| ||| |||||  |||||||||| ||||| |||||||||| ||| || || | ||||||||||||||||||||    
T  47116004 attacattattaaacagacgattattttgttcattccacacaactcaggcacaaaaaagtcatataaattgcataaaagaacgtctag 47116091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 48266242 - 48266055
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||| |||  |||| ||||| |||| ||||||||||||||||||| |||  || |||| ||| | |||  |||  ||||  || ||| | ||     
T  48266242 ccaccactgctaagtatcaaacacaaaagtagtttttttagctttcaaccaagctaaggacaacatcttgaccttgcctaacaaacggggaatgagagtt 48266143  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| |||||||| ||| ||||| || |||||||| ||||||||| |||| |||||||| || |||||||||||| ||| |||||    
T  48266142 attacattattaaacagacgattatttcgctcattccacacaacccagacacagagaagccaaataagttgcataaaataacatctag 48266055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 9528277 - 9528226
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaa 74  Q
    ||||||||||||||| ||||| ||||| |||||||||||| |||||||||||    
T  9528277 ccaccactgctgagtaccaaacacaaaagtagattttttaactttcaaccaa 9528226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 30971098 - 30970951
Alignment:
Q  57 tttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaacaacatgattaaacatacggttattacgttcat 156  Q
    |||||||||| || |||||||| ||| || | |||||||||||  || | ||| || ||||| |||| |||||  |||||||  ||  |||| || ||||    
T  30971098 tttttagcttgcagccaacctaaagacaataacttaatcttataaagcagacagggaatgggagtaaaaacattgttaaacaatcgactattgcgctcat 30970999  T
Q  157 tccaaacaacccaggcacaaagaagccagattagttgcataaaagaac 204  Q
     ||| |||||||| |||||||| |||||||| |||||||| |||||||    
T  30970998 gccacacaacccaagcacaaaggagccagatgagttgcatgaaagaac 30970951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 25639987 - 25639908
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatcta 102  Q
    |||||||||||| || ||||||||||| |||| |||| ||||||||||| ||| ||  || |||| ||||| ||||||||    
T  25639987 ccaccactgctgggtaccaaaaacaaaagtagcttttctagctttcaactaacttaaggacaacatcttaaccttatcta 25639908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 23601389 - 23601590
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  23601389 ccaccactgttgagtcccaaaaacaaagatagcttttttagctttcaaccaacctagagacagcagcttaatcttatctagtaaacaagggatgggggta 23601488  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23601489 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcaccaccac 23601588  T
Q  223 ct 224  Q
    ||    
T  23601589 ct 23601590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 7146657 - 7146858
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  7146657 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacatcagcttaatcttatctagtaaacaagggatgggggta 7146756  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||    
T  7146757 acaacatgattaaacatccggttattacgttcattccaaacaacccaggcacaaagaagccatataagttgcaaaaaagaacgtctagcagcaccaccac 7146856  T
Q  223 ct 224  Q
    ||    
T  7146857 ct 7146858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 6177002 - 6176801
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||    
T  6177002 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaatcttatctagtaaacaagagatgagggta 6176903  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| |||| ||||    
T  6176902 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacataaaagccatattagttgcataaaagaacgtctagcaacaccaccac 6176803  T
Q  223 ct 224  Q
    ||    
T  6176802 ct 6176801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 2814024 - 2813823
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  2814024 ccaccattgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaacttaatcttatctagtaaacaagggatgggggta 2813925  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| || |||||||||||||| |||||||||||| |||| ||||    
T  2813924 acaacatgattaaacatacggttattacgttcattccagactacccaggcacatagaagtcatattagttgcataaacgaacgtctagcaacaccaccac 2813825  T
Q  223 ct 224  Q
    ||    
T  2813824 ct 2813823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 29309023 - 29309225
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggat-gggggt 121  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| ||| ||||||    
T  29309023 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacagcagcttaatcttagctagtaaacaagagatggggggt 29309122  T
Q  122 aacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctcca 221  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||| |||| ||||| || |||||||||||||||||||||||||||||||| |||    
T  29309123 aacaacatgattaaacatacggttgttacgctcattccacacaacccagacacatagaagtcatattagttgcataaaagaacgtctagcagcaccacca 29309222  T
Q  222 cct 224  Q
    |||    
T  29309223 cct 29309225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 25873636 - 25873435
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||| ||| | || ||||| |||||| |||||||| ||||||||||||    
T  25873636 ccaccactgctgagttccaaaaacaaagatagcttttttagctttcagccaacctaaagacatcaacttaaccttatcaagtaaacacgggatgggggta 25873537  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||| ||||||||||| ||||    
T  25873536 acaacatgattaaacagacgattattacgttcattccaaacaacccagacacatagaagccatatgagttgcataaaagaacgcctagcagcaccaccac 25873437  T
Q  223 ct 224  Q
    ||    
T  25873436 ct 25873435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 9378729 - 9378895
Alignment:
Q  39 ccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaacaacatgattaaaca 138  Q
    |||| ||||||||||| ||||||| |||| | |||||||| ||| |||| ||||| ||| |||| |||||  |||||||| |||||||||| ||||||||    
T  9378729 ccaataacaaaggtagcttttttaacttttagccaacctaaagacaacatcttaaccttgtctaataaacgggggatgggagtaacaacattattaaaca 9378828  T
Q  139 tacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacg 205  Q
     ||| |  || | |||||||||||||||||||||||| ||||| || || |||||||||||||||||    
T  9378829 gacgatagtttcattcattccaaacaacccaggcacacagaagtcatatgagttgcataaaagaacg 9378895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 30167869 - 30167682
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||| | || ||| ||||||| |||| |||| ||||||||||||||||||  || |||| |||||  || ||||  ||||  || ||| | ||     
T  30167869 ccaccactgccgggtaccataaacaaaagtagcttttctagctttcaaccaacctaaggacaacatcttaactttgtctaacaaacggggaatgagagtt 30167770  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| |||||||| ||| ||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||    
T  30167769 attacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagttgcataaaagaacgtctag 30167682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 28675453 - 28675265
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||| ||| || || |||||||| |||| ||||||| |||||||||| |||| ||| |||| ||||| ||| ||||  || | ||| ||||| |||    
T  28675453 ccaccactactgcgtaccgaaaacaaaagtagcttttttaactttcaaccagcctaaagacaacatcttaaccttgtctaacaatcgaggaatgggagta 28675354  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagc 211  Q
    ||||||| |||||| |  || ||||| |||| |||||| ||||| ||| |||| ||||| || || |||||||||||||||||||||||    
T  28675353 acaacattattaaataggcgattatttcgttaattccacacaacacagacacacagaagtcaaatgagttgcataaaagaacgtctagc 28675265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 49732457 - 49732270
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||| ||||| |||| ||||||||||||||||||| |||  || |||| ||| | ||| ||||  ||||  || ||| | ||     
T  49732457 ccaccactgctgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatcttgaccttgtctaacaaacggggaatgagagtt 49732358  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| |||||||| ||| ||||| || || ||||| ||||||| |||||| |||||||| || ||||||||||||||||||||||    
T  49732357 attacattattaaacagacgattatttcgctcgttccacacaacccgggcacagagaagccaaataagttgcataaaagaacgtctag 49732270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 13448197 - 13448281
Alignment:
Q  126 acatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |||| |||||||| ||| ||||| ||||||||||| ||||| |||||||| |||||||| || ||||||||||||||||||||||    
T  13448197 acattattaaacagacgattatttcgttcattccacacaactcaggcacagagaagccaaataagttgcataaaagaacgtctag 13448281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 9163553 - 9163486
Alignment:
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattag 190  Q
    ||||||| ||||||||  |||||||||||||||||||| |||| ||| | |||||||| |||||||||    
T  9163553 acaacattattaaacaggcggttattacgttcattccacacaatccaagtacaaagaatccagattag 9163486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 24227431 - 24227617
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||| |||||||| | ||||||||| |||  |||||||||||||||||||||||  || |||| |||||  || |||| ||| |  || ||||| |||    
T  24227431 ccaccattgctgagtactaaaaacaaaagtaatttttttagctttcaaccaacctaacgacaacatcttaactttgtctaataagctgggaatgggagta 24227530  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |||| ||   |||| |  || |||||||||||||| || |||||||| ||||| |||| ||| || |||||||| ||||  |||||||    
T  24227531 acaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacagaa-ccaaatgagttgcatgaaagggcgtctag 24227617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 32004596 - 32004647
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaa 74  Q
    ||||||||||||||| ||||| ||||| |||| | |||||||||||||||||    
T  32004596 ccaccactgctgagtaccaaacacaaaagtagttcttttagctttcaaccaa 32004647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 19824219 - 19824131
Alignment:
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagc 211  Q
    ||||||| ||||||||  |||||||||||||| ||||| |||| ||| | ||| ||||  ||||||||||| | ||| |||||| ||||    
T  19824219 acaacattattaaacaggcggttattacgttcgttccacacaatccaagtacatagaattcagattagttgtaaaaaggaacgtttagc 19824131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 33547488 - 33547689
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| |||||||| ||||||||||||    
T  33547488 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaaccttatcaagtaaacaggggatgggggta 33547587  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33547588 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcaccaccac 33547687  T
Q  223 ct 224  Q
    ||    
T  33547688 ct 33547689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 43627114 - 43627316
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagatttt-ttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggt 121  Q
    ||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43627114 ccaccactgctgagtcccaaaaacaaatgtagctttttttagctttcaaccaacctagagacaacagcttaatcttatctagtaaacaagggatgggggt 43627213  T
Q  122 aacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctcca 221  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||    
T  43627214 aacaacatgattaaacatccggttattacgttcattccaaacaacccaggcacaaagaagccatataagttgcataaaagaacgtctagcagcaccacca 43627313  T
Q  222 cct 224  Q
    |||    
T  43627314 cct 43627316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 13549740 - 13549941
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||| |  ||||||| ||| |||| |||||||||||||| |||||||||||||||||||    
T  13549740 ccaccactgctgagttccaaaaacaaaggtagcttttttaactttaagtcaacctaaagacaacatcttaatcttatctaataaacaagggatgggggta 13549839  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||    
T  13549840 acaacatgattaaacagacggttatttcgttcattccacacaacccaggcacaaagaagccaaataagttgcataaaagaacgtctagcaacaccaccac 13549939  T
Q  223 ct 224  Q
    ||    
T  13549940 ct 13549941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 9949788 - 9949588
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||  ||||||||||||||| |||||||||||| | |||||||| ||| | || ||||| |||||| |||||||||||||||||||||    
T  9949788 ccaccactgctgagtgtcaaaaacaaaggtagcttttttagcttttagccaacctaaagacatcaacttaaccttatcaagtaaacaagggatgggggta 9949689  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    || ||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||||||| ||||    
T  9949688 accacatgattaaacagacgattattacgttcattccaaacaacccagacacatagaagccatataagttgcataaaagaacgtctagcagcaccaccac 9949589  T
Q  223 c 223  Q
    |    
T  9949588 c 9949588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 26681497 - 26681670
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||| ||| |||| ||||| |||||| |||||||||||||||||||||    
T  26681497 ccaccactgttgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacaacaacttaaccttatcaagtaaacaagggatgggggta 26681596  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcat 196  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||    
T  26681597 acaacatgattaaacagacggttatttcgttcattccaaacaacccagacacatagaagccatattagttgcat 26681670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 22052243 - 22052444
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||| | |||||||| ||| |||| |||||||||||||| ||||||| |||||||||||    
T  22052243 ccaccactgctgagttccaaaaacaaaagtagcttttttagctttaagccaacctaaagacaacaacttaatcttatctaataaacaatggatgggggta 22052342  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||||||||||||||  ||||||||| ||||||||||| | ||||||| |||| |||||||| || ||||||| |||||| ||||||||| |||| ||||    
T  22052343 acaacatgattaaactgacggttatttcgttcattccagataacccagacacatagaagccaaatgagttgcaaaaaagaccgtctagcaacaccaccac 22052442  T
Q  223 ct 224  Q
    ||    
T  22052443 ct 22052444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 31594170 - 31594336
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||| | ||  |||| |||||| |||||||||||||||||||||    
T  31594170 ccaccactgctgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaatttaaccttatcaagtaaacaagggatgggggta 31594269  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagatta 189  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||| ||||    
T  31594270 acaacatgattaaacagacggttatttcgttcattccaaacaacccagacacatagaagccatatta 31594336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 35694249 - 35694410
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| | |||||| ||| | |  ||||||||||||||||||||||||||||||| ||    
T  35694249 ccaccactgctgagttccaaaaacaaaggtagtttttttagctttcagctaacctaaagacagcgtcttaatcttatctagtaaacaagggatggggata 35694348  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagcca 184  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| || ||||  ||||||||    
T  35694349 acaacatgattaaacacacggttatttcgttcattccaaacaactcaagcacgtagaagcca 35694410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 31086145 - 31085972
Alignment:
Q  39 ccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaacaacatgattaaaca 138  Q
    ||||||||||| |||| |||||||||||||||| |||||| ||| |||  ||||||||| |||| |||||| |||||||| |||||||||| ||||||||    
T  31086145 ccaaaaacaaatgtagcttttttagctttcaactaacctaaagacaacgtcttaatcttgtctaataaacacgggatgggagtaacaacattattaaaca 31086046  T
Q  139 tacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagca 212  Q
    | |||||||| |||| ||||||||||||||||||||| | ||| || || ||||||||||||||||||||||||    
T  31086045 tgcggttatttcgttaattccaaacaacccaggcacacaaaaggcatatgagttgcataaaagaacgtctagca 31085972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 45421134 - 45421321
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||| || ||| ||||||| |||| |||| ||||||||||||||||||  || |||| |||||  || ||||  ||||  || ||| | ||     
T  45421134 ccaccactgctgggtaccataaacaaaagtagcttttctagctttcaaccaacctaaggacaacatcttaactttgtctaacaaacgtggaatgtgagtt 45421233  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| |||||||| ||| ||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||    
T  45421234 attacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagttgcataaaagaacgtctag 45421321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 31774334 - 31774481
Alignment:
Q  57 tttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaacaacatgattaaacatacggttattacgttcat 156  Q
    ||||||||||||| | | |||| ||| |||| ||||| |||||| || ||||| || ||||| |||| |||||  |||||||  ||  |||| |  ||||    
T  31774334 tttttagctttcagcaatcctaaagacaacatcttaaccttatcaagcaaacagggaatgggagtaataacatttttaaacaagcgactattgccctcat 31774433  T
Q  157 tccaaacaacccaggcacaaagaagccagattagttgcataaaagaac 204  Q
    |||| ||||| || ||||||||||| ||||| |||||||| |||||||    
T  31774434 tccacacaactcaagcacaaagaagtcagatgagttgcatgaaagaac 31774481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 13439673 - 13439870
Alignment:
Q  27 cactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaacaa 126  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||    
T  13439673 cactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaaccttatcaagtaaacaggggatgggggtaacaa 13439772  T
Q  127 catgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccacct 224  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13439773 cgtgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcaccaccacct 13439870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 28326975 - 28327173
Alignment:
Q  26 ccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaaca 125  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  28326975 ccactgctgagtcccaaaaacaaatatagcttttttagctttcaaccaacctagagacagcagcttaatcttatctagtaaacaagggatgggggtaaca 28327074  T
Q  126 acatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccacct 224  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  28327075 acatgattaaacattcggttattacgttcattccaaacaacccaagcacaaagaagccaaataagttgcataaaagaacgtctagcagcaccaccacct 28327173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 29 - 224
Target Start/End: Original strand, 30385822 - 30386016
Alignment:
Q  29 ctgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaacaaca 128  Q
    ||||||| ||||||||||||| ||||  |||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||    
T  30385822 ctgctgaatcccaaaaacaaatgtagcatttttagctttcaaccaacctagagacaacaacttaatcttgtctagtaaacaagggatgggggtaacaaca 30385921  T
Q  129 tgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccacct 224  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || |||||||| |||||| |||||||| |||| ||||||    
T  30385922 tgattaaacatacggttattacgttcattccaaacaacccagacacatagaagccatataagttgcat-aaagaatgtctagcaacaccaccacct 30386016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 45235566 - 45235755
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||  |||||| |||||||||||||||| ||||||||| |||| |||||||| ||| | |  ||||||||| |||| |||||||||||||||| ||    
T  45235566 ccaccacgactgagttccaaaaacaaaggtagcttttttagcattcagccaacctaaagacatcgtcttaatcttttctaataaacaagggatggggata 45235665  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagca 212  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||| ||||  ||||||| |||||||||||||||||||||||||||    
T  45235666 acaacatgattaaacaaacggttatttcattcattccaaacaacccagacacatggaagccatattagttgcataaaagaacgtctagca 45235755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 3632419 - 3632561
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||||| |||||| ||| ||||||||||||||||||| | ||||| | || ||||||    
T  3632419 ccaccactgctgagtcccaaaaacaaagataacttttttagctttcaactaacctaaagacaacagcttaatcttatctaat-aacaaagaat-ggggta 3632516  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacc 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3632517 acaacatgattaaacatacggttattacgttcattccaaacaacc 3632561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 45942534 - 45942668
Alignment:
Q  90 ttaatcttatctagtaaacaagggatgggggtaacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagatta 189  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||||| ||||||||||||| ||||    
T  45942534 ttaatcttatctaataaacaagggatgggggtaacaacatgattaaacaaatggttatttcgttcattccacacaacccagacacaaagaagccaaatta 45942633  T
Q  190 gttgcataaaagaacgtctagcagcacctccacct 224  Q
    |||||||||||||| || ||||| |||| ||||||    
T  45942634 gttgcataaaagaatgtgtagcaacaccaccacct 45942668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 12379249 - 12379061
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||| ||||| || |||||||||||| ||| |||||||||||||| |||||||| ||| |||| |||||  || |||| |||||| |||||||| |||    
T  12379249 ccaccattgctgtgttccaaaaacaaagttagcttttttagctttcagccaacctaaagacaacaacttaacattgtctaataaacaggggatgggagta 12379150  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagc 211  Q
    || |||| ||||||||  |  ||||| ||||||||||| ||||| |||||||| |||||||| |  |||||||||||||||||||||||    
T  12379149 actacattattaaacaggcatttatttcgttcattccacacaacgcaggcacacagaagccatacgagttgcataaaagaacgtctagc 12379061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 212
Target Start/End: Original strand, 3104540 - 3104708
Alignment:
Q  44 aacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaacaacatgattaaacatacgg 143  Q
    ||||||||||| |||||||||||||| |||||||| ||| |||| ||||| ||| ||||| ||||| || ||||| || | ||||| |||||| |  ||     
T  3104540 aacaaaggtagcttttttagctttcagccaacctaaagacaacatcttaaccttgtctagcaaacatggaatgggagttataacatcattaaataggcga 3104639  T
Q  144 ttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagca 212  Q
    || || ||||||||||||||||| |||||||| | ||| || | |||||||||||||||||||||||||    
T  3104640 ttgtttcgttcattccaaacaacacaggcacacataagacataatagttgcataaaagaacgtctagca 3104708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 15654225 - 15654042
Alignment:
Q  27 cactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaacaa 126  Q
    |||||||| || ||||||||||| |||| ||| |||||||||||||| |||| ||| |||| ||| | ||| ||||  ||||  || ||||| || |  |    
T  15654225 cactgctgggtaccaaaaacaaaagtagttttattagctttcaaccatcctaaagacaacatctttaccttgtctaacaaacggggaatgggagttatta 15654126  T
Q  127 catgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    ||| |||||||| ||| ||||| ||||||||||| ||||| || |||||||||||||| || ||||||||||||||||||||||    
T  15654125 cattattaaacagacgattatttcgttcattccacacaactcatgcacaaagaagccatataagttgcataaaagaacgtctag 15654042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 46623320 - 46623507
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||| ||| || ||||||||||| |||| |||||||||||||||||| ||||  || |||| ||||| ||| ||||  ||||  || ||| | ||     
T  46623320 ccaccactactgggtaccaaaaacaaaagtagcttttttagctttcaaccatcctaaggacaacatcttaaccttgtctaacaaacggggaatgagagtt 46623419  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| |||||||| ||| ||||| |||||||| || || ||||| |||||||||||||| || ||||||||||||||||||||||    
T  46623420 attacattattaaacagacgattatttcgttcatttcacacgacccatgcacaaagaagccatataagttgcataaaagaacgtctag 46623507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 43104929 - 43105105
Alignment:
Q  25 accactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaac 124  Q
    ||||||||| ||  |||||||||||   || |||||||||||||||||| |||| |||||||| ||||| ||| |||| |||||  || ||||| |||||    
T  43104929 accactgctcagagccaaaaacaaaacaagcttttttagctttcaaccatcctaaagaaaacatcttaaccttgtctaataaacggggaatgggagtaac 43105028  T
Q  125 aacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaag 201  Q
     |||| ||||||||  || || ||  ||||||||||||||| ||| || || | |||||| || |||| ||||||||    
T  43105029 cacattattaaacaggcgattgttttgttcattccaaacaagccaagcgcacaaaagccaaatgagttacataaaag 43105105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 21277575 - 21277520
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaaccta 78  Q
    |||||||||||| || |||||||||||| ||| |||||||||||||||||||||||    
T  21277575 ccaccactgctgggtaccaaaaacaaagatagcttttttagctttcaaccaaccta 21277520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 9546353 - 9546404
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaa 74  Q
    ||||||||||||||| ||||| ||||| |||| |||||||||||||||||||    
T  9546353 ccaccactgctgagtaccaaacacaaaagtagcttttttagctttcaaccaa 9546404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 5020996 - 5020908
Alignment:
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagc 211  Q
    ||||||| ||||||||  |||||||||||||| ||||| |||| ||| | ||| |||| ||||||||| || | ||| |||||| ||||    
T  5020996 acaacattattaaacaggcggttattacgttcgttccacacaatccaagtacatagaatccagattagctgtaaaaaggaacgtttagc 5020908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 23347990 - 23347796
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  23347990 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaacttaatcttatctggtaaacaagggatgggggta 23347891  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||    
T  23347890 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacataaaagccatattagttgcataaaagaacgtctagcaacacc 23347796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 15673441 - 15673642
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||    
T  15673441 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacagcagcttaatcttatctaataaacaagggatgggggta 15673540  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||    
T  15673541 acaaaatgattaaacaaacggttattacgttcattccaaacaacccaggcacatagaagccaaattagttgcataaaagaacgtctagcaacaccaccac 15673640  T
Q  223 ct 224  Q
    ||    
T  15673641 ct 15673642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 13755081 - 13755282
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||||||||    
T  13755081 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacagcagtttaatcttatctagtaaacaatggatgggggta 13755180  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    ||||| ||||||||||||||||| ||||| |||||||| ||||||||| |||| ||||| || |||||||||||||||||||||||||||||||| ||||    
T  13755181 acaacctgattaaacatacggttgttacgctcattccacacaacccagacacatagaagtcatattagttgcataaaagaacgtctagcagcaccaccac 13755280  T
Q  223 ct 224  Q
    ||    
T  13755281 ct 13755282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 8873350 - 8873149
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||| ||| | || ||||| |||||| |||||||||||||||||||||    
T  8873350 ccaccactgttgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaacttaaccttatcaagtaaacaagggatgggggta 8873251  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||| ||||    
T  8873250 acaacatgattaaacagacggttatttcgttcattccaaacaacccagacacatagaagccatattagttgcataaaagaacgtctaacagcaccaccac 8873151  T
Q  223 ct 224  Q
    ||    
T  8873150 ct 8873149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 25317472 - 25317671
Alignment:
Q  25 accactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaac 124  Q
    ||||||||||||| |||||||||||||||| ||||||| |||| | |||||||| ||| |||| |||||||||||||| |||||||||||||||||||||    
T  25317472 accactgctgagttccaaaaacaaaggtagtttttttaactttaagccaacctaaagacaacatcttaatcttatctaataaacaagggatgggggtaac 25317571  T
Q  125 aacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccacct 224  Q
    ||| |||||||| | ||||||||| | ||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||    
T  25317572 aacctgattaaagagacggttatttctttcattccacacaactcatgcacaaagaagccaaattagttgcataaaagaacgtctagcaacaccaccacct 25317671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 26204966 - 26205165
Alignment:
Q  25 accactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaac 124  Q
    ||||||||||||| |||||||||||||||| ||||||| |||| | |||||||| ||| |||| |||||||||||||| |||||||||||||||||||||    
T  26204966 accactgctgagttccaaaaacaaaggtagtttttttaactttaagccaacctaaagacaacatcttaatcttatctaataaacaagggatgggggtaac 26205065  T
Q  125 aacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccacct 224  Q
    ||| |||||||| | ||||||||| | ||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||    
T  26205066 aacctgattaaagagacggttatttctttcattccacacaactcatgcacaaagaagccaaattagttgcataaaagaacgtctagcaacaccaccacct 26205165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 19348890 - 19349082
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||||||||||||||         |||| | |||||||| ||| |||| ||||||||||||||||||||||||||||||||||    
T  19348890 ccaccactgctgagttccaaaaacaaaggtag---------ctttaagccaacctaaagacaacatcttaatcttatctagtaaacaagggatgggggta 19348980  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||| ||||    
T  19348981 acaccatgattaaacatacggttatttcgttcattccaaacaacccaggcacagagaagccatattagttgcataaaagaccgtctagcaacaccaccac 19349080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 1682765 - 1682857
Alignment:
Q  126 acatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacct 218  Q
    |||| |||||||| ||| ||||| ||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||| |||||    
T  1682765 acattattaaacagacgattatttcgttcattccacacaacccaggcacagagaagccaaataagttgcataaaagaacgtctagcaccacct 1682857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 33629714 - 33629900
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| ||||| ||||| ||||| |||| ||||||||||||||||||| |||  || ||||  || | ||| ||||  ||||  || ||||| ||     
T  33629714 ccaccactgttgagtaccaaacacaaaagtag-ttttttagctttcaaccaagctaaggacaacaatttgaccttgtctaacaaacggggaatgggagtt 33629812  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  | || ||||||||  || ||||| |||| |||||| |||||||||||||| |||||||| || ||||||||||||||||||||||    
T  33629813 attatattattaaacaggcgattatttcgttaattccacacaacccaggcacagagaagccaaataagttgcataaaagaacgtctag 33629900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 19256661 - 19256849
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||| | ||||| ||| | |||||  ||| |||| ||||||||||||| |||| ||| ||||  |||| ||| |||| |||||  || || |  |||    
T  19256661 ccaccacggttgagtaccatacacaaaaataggttttatagctttcaaccatcctaaagacaacatattaaccttgtctaataaacggggaatagacgta 19256760  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagc 211  Q
    ||||||| |||||| |  |  ||||| |||||||||||||||||| || |||| |||||||| || |||||||||||||| ||||||||    
T  19256761 acaacattattaaagaggcaattatttcgttcattccaaacaacctagacacacagaagccaaatgagttgcataaaagagcgtctagc 19256849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 4406736 - 4406816
Alignment:
Q  131 attaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagc 211  Q
    |||||||| ||| || || ||||||||||| |||||||||||||||||||| || ||||| |||| ||| |||||||||||    
T  4406736 attaaacagacgattgtttcgttcattccacacaacccaggcacaaagaagtcatattagctgcagaaacgaacgtctagc 4406816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 4474414 - 4474502
Alignment:
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagc 211  Q
    ||||||| |||||||||  |||||||||||||  |||| || ||||| | ||||||||||||||| || |||||||| |||||| ||||    
T  4474414 acaacattattaaacatgtggttattacgttcggtccacacgacccaagtacaaagaagccagatgagctgcataaaggaacgtttagc 4474502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 14528110 - 14528150
Alignment:
Q  144 ttattacgttcattccaaacaacccaggcacaaagaagcca 184  Q
    ||||||||||||||||| |||||| ||||||||||||||||    
T  14528110 ttattacgttcattccacacaaccaaggcacaaagaagcca 14528150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 33745819 - 33745899
Alignment:
Q  131 attaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagc 211  Q
    |||||||| ||| ||||| || |||||||| |||||||| |||||||||||||| || || || | ||| |||||||||||    
T  33745819 attaaacagacgattatttcgctcattccacacaacccaagcacaaagaagccatatgagctgaagaaatgaacgtctagc 33745899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 14532836 - 14532873
Alignment:
Q  144 ttattacgttcattccaaacaacccaggcacaaagaag 181  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  14532836 ttattacgttcattccacacaaccaaggcacaaagaag 14532873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 2871807 - 2872007
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||||    
T  2871807 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagatagcagcttaatcttatctagtaaacaaggtat-ggggta 2871905  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| |||| ||||    
T  2871906 acaacatgattaaacatctgattattacgttcattccaaacaacccaggcacaaagaagccatataagttgcataaaagaacgtccagcaacaccaccac 2872005  T
Q  223 ct 224  Q
    ||    
T  2872006 ct 2872007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 16421533 - 16421332
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  16421533 ccaccactgctgagttccaaaaacaaaggtagcttttttagctttcaaccaacctagagatagcagcttaatcttatctagtaaacaagggatgggggta 16421434  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||| ||||||||||| |||||| ||||| |||||||| ||||||||  |||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  16421433 acaatatgattaaacaaacggttgttacgctcattccacacaacccaaacacatagaagccatattagttgcataaaagaacgtctagcagcaccaccac 16421334  T
Q  223 ct 224  Q
    ||    
T  16421333 ct 16421332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 412889 - 412711
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| ||| | |||||||||||||||| |||||||||||||| |||||||| ||| | || ||||||||||||||||||||||||||||||| ||    
T  412889 ccaccactgttgaattccaaaaacaaaggtagtttttttagctttcagccaacctaaagacagcaacttaatcttatctagtaaacaagggatgggg-ta 412791  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaaga 202  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||||    
T  412790 acaacatgattaaacagacggttatttcgttcattccaaacaacccagacacaaagaagcaatattagttgcataaaaga 412711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 7451968 - 7452155
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| || || |||||||||||| ||| |||||||||||||||||||||||  || |||| ||| | ||| ||||  ||||  |||||||| ||     
T  7451968 ccaccactgttgggtaccaaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatctttaccttgtctaacaaacgggggatgggagtt 7452067  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    | ||||| |||||||| ||| |||||  |||||||||| ||||||||| ||||||| ||||| || ||||||||||||||||||||||    
T  7452068 ataacattattaaacagacgattattttgttcattccacacaacccagtcacaaagtagccatataagttgcataaaagaacgtctag 7452155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 35405361 - 35405464
Alignment:
Q  24 caccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaa 123  Q
    |||||||||||| | |||||||||||||||| |||||||||||| | |||||||| ||| ||   ||||||||| |||| ||||||||||||||||| ||    
T  35405361 caccactgctgaattccaaaaacaaaggtagcttttttagcttttagccaacctaaagacaatgtcttaatcttttctaataaacaagggatgggggcaa 35405460  T
Q  124 caac 127  Q
    ||||    
T  35405461 caac 35405464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 30501686 - 30501756
Alignment:
Q  125 aacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgca 195  Q
    ||||| |||||||| ||||||||||||||||||||| | |||||| ||||||||||||||||||| |||||    
T  30501686 aacattattaaacagacggttattacgttcattccacaaaacccaagcacaaagaagccagattaattgca 30501756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 19385234 - 19385049
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| || || ||||| |||| |||||||||||| ||||||  ||  || |||| ||| | ||| ||||  ||||  || ||| | ||     
T  19385234 ccaccactgctgagtaccgaacacaaaagtagcttttttagcttttaaccaagataaggacaacatcttgaccttgtctaagaaacggggaatgagagtt 19385135  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtct 208  Q
    |  |||| |||||||| ||| ||||| ||||||||||| ||||| |||||||| | |||| | || ||||||||||||||||||||    
T  19385134 attacattattaaacagacgattatttcgttcattccacacaacacaggcacagataagctaaataagttgcataaaagaacgtct 19385049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 12218541 - 12218486
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaaccta 78  Q
    ||||||||||||||| ||||||| |||| ||| |||| ||||||||||||||||||    
T  12218541 ccaccactgctgagtaccaaaaataaagatagcttttctagctttcaaccaaccta 12218486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 35405459 - 35405522
Alignment:
Q  161 aacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccacct 224  Q
    |||||||||| |||| |||| ||| || |||||||||||||||||||||||| |||| ||||||    
T  35405459 aacaacccagacacatagaaaccatataagttgcataaaagaacgtctagcaacaccaccacct 35405522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 7555171 - 7555251
Alignment:
Q  131 attaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagc 211  Q
    |||||||| ||||||||||||||| ||||  | ||| || | ||||||||| |||||||| |||| ||| |||||||||||    
T  7555171 attaaacagacggttattacgttcgttccgcaaaactcaagtacaaagaagtcagattagctgcagaaacgaacgtctagc 7555251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 6264722 - 6264521
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||| |||| ||||| |||||  |||||||||||||||||||||    
T  6264722 ccaccactgctgagttccaaaaacaaaagtagcttttttagctttcaaccaacctaaagacaacaacttaaccttataaagtaaacaagggatgggggta 6264623  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| |||||||||| ||||    
T  6264622 acaacatgattaaacagacggttatttcgttcattccaaacaacccagacacatagaagccatattagttgcataaaagaacgtttagcagcaccaccac 6264523  T
Q  223 ct 224  Q
    ||    
T  6264522 ct 6264521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 32917933 - 32918134
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||| | |||||||| ||| |||| |||||||||||||| |||||||||||||||||||    
T  32917933 ccaccactgctgagttccaaaaacaaaggtagcttttttaactttaagccaacctaaagacaacatcttaatcttatctaataaacaagggatgggggta 32918032  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||| ||||    
T  32918033 acaacatgattaaacagacggttatttcgttcattccaaacaacccaggcacatagaagccaaattagttgcataaaagaccgtctagcaacaccaccac 32918132  T
Q  223 ct 224  Q
    ||    
T  32918133 ct 32918134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 34858217 - 34858058
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  34858217 ccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaatcttatcaagtaaacaggggataggggta 34858118  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagc 182  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34858117 acaacatggttaaacatacggttattacgttcattccaaacaacccaggcacaaagaagc 34858058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 34480572 - 34480773
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||| | || ||||| |||||| |||||||||||||||||||||    
T  34480572 ccaccactgctgagtgccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaacttaaccttatcaagtaaacaagggatgggggta 34480671  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    || ||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||||||| ||||    
T  34480672 accacatgattaaacagacgattattacgttcattccaaacaacccagacacatagaagccatataagttgcataaaagaacgtctagcagcaccaccac 34480771  T
Q  223 ct 224  Q
    ||    
T  34480772 ct 34480773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 15500170 - 15499969
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||| | |||||||| ||| || | |||||||||||||| |||||||  ||||||||||    
T  15500170 ccaccactgctgagttccaaaaacaaaagtagcttttttagctttaagccaacctaaagacaataacttaatcttatctaataaacaattgatgggggta 15500071  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccac 222  Q
    |||||||||||||||| | ||||||| ||||||||||| | ||||||| |||| |||||||| || ||||||| |||||| ||||||||| |||| ||||    
T  15500070 acaacatgattaaacagatggttatttcgttcattccagataacccagacacatagaagccaaatgagttgcaaaaaagaccgtctagcaacaccaccac 15499971  T
Q  223 ct 224  Q
    ||    
T  15499970 ct 15499969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 10487430 - 10487243
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| ||||| ||||| ||||| |||| ||||||||||||||||||| |||  || |||| ||| | ||||||||  ||||   | ||||  ||     
T  10487430 ccaccactgttgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatcttgaccttatctaacaaacggagaatggaagtt 10487331  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| |||||||| ||| ||||| || |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  10487330 attacattattaaacagacgattatttcgctcattccacacaacccaggcacaaagaagccaaataagttgcataaaagaacgtctag 10487243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 211
Target Start/End: Original strand, 587148 - 587320
Alignment:
Q  39 ccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggtaacaacatgattaaaca 138  Q
    ||||||||||| |||| |||||||| ||||||||||||||  || |||| |||||  || |||| |||   ||| ||||| ||||||||||   |||| |    
T  587148 ccaaaaacaaaagtagtttttttaggtttcaaccaacctaatgacaacatcttaactttgtctaataagagaggaatgggagtaacaacatttctaaaga 587247  T
Q  139 tacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagc 211  Q
      || ||||||||||| ||||| ||||| || ||||| | |||||| || |||||||| ||||| ||||||||    
T  587248 ggcgattattacgttcgttccatacaactcaagcacacaaaagccaaatgagttgcatgaaagagcgtctagc 587320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 31862330 - 31862397
Alignment:
Q  144 ttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctagc 211  Q
    |||||| |||||||||| | ||||||| ||||||||||||| ||||||||||| ||||| ||||||||    
T  31862330 ttattatgttcattccacaaaacccagacacaaagaagccatattagttgcatgaaagaccgtctagc 31862397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 13666 - 13524
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||||| |||||| ||| ||||||||||||||||||| | ||||| | || ||||||    
T  13666 ccaccactgctgagtcccaaaaacaaagataacttttttagctttcaactaacctaaagacaacagcttaatcttatctaat-aacaaagaat-ggggta 13569  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacc 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13568 acaacatgattaaacatacggttattacgttcattccaaacaacc 13524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 7291 - 7478
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||| || || ||||||||||| |||| |||| ||||||||||||||||||  || |||| ||||| ||| ||||  ||||  || ||| | ||     
T  7291 ccaccactgatgggtaccaaaaacaaaagtagcttttctagctttcaaccaacctaaggacaacatcttaaccttgtctaacaaacggggaatgagagtt 7390  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtctag 210  Q
    |  |||| |||||||| ||| ||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||    
T  7391 attacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagttgcataaaagaacgtctag 7478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 135160 - 134975
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||| |||  || |||| ||| | ||||||||  ||||  || ||||| ||     
T  135160 ccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatcttgaccttatctaacaaacggggaatgggagtt 135061  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtct 208  Q
    |  |||| ||||||||  || ||||| || |||||| | |||||||| ||||| |||||||| || ||||||||||||||||||||    
T  135060 attacattattaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaaataagttgcataaaagaacgtct 134975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 312987 - 312802
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||| |||  || |||| ||| | ||||||||  ||||  || ||||| ||     
T  312987 ccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatcttgaccttatctaacaaacggggaatgggagtt 312888  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtct 208  Q
    |  |||| ||||||||  || ||||| || |||||| | |||||||| ||||| |||||||| || ||||||||||||||||||||    
T  312887 attacattattaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaaataagttgcataaaagaacgtct 312802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 328441 - 328256
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaacagcttaatcttatctagtaaacaagggatgggggta 122  Q
    ||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||| |||  || |||| ||| | ||||||||  ||||  || ||||| ||     
T  328441 ccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatcttgaccttatctaacaaacggggaatgggagtt 328342  T
Q  123 acaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtct 208  Q
    |  |||| ||||||||  || ||||| || |||||| | |||||||| ||||| |||||||| || ||||||||||||||||||||    
T  328341 attacattattaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaaataagttgcataaaagaacgtct 328256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 22737 - 22673
Alignment:
Q  23 ccaccactgctgagtcccaaaaacaaaggtagattttttagctttcaaccaacctagagaaaaca 87  Q
    ||||||||||||||| ||||| ||||| || | ||||||||||||||| ||| ||| ||| ||||    
T  22737 ccaccactgctgagtaccaaacacaaaagtggtttttttagctttcaatcaagctaaagacaaca 22673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University