View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2498_high_1 (Length: 892)

Name: NF2498_high_1
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2498_high_1
NF2498_high_1
[»] chr7 (9 HSPs)
chr7 (16-295)||(42592352-42592631)
chr7 (357-447)||(46816178-46816268)
chr7 (388-455)||(13863816-13863883)
chr7 (388-455)||(44599994-44600061)
chr7 (389-455)||(8643625-8643691)
chr7 (388-455)||(13863442-13863509)
chr7 (388-455)||(44599618-44599685)
chr7 (306-355)||(27096343-27096392)
chr7 (306-355)||(27181911-27181960)
[»] chr3 (4 HSPs)
chr3 (779-879)||(54534836-54534936)
chr3 (678-783)||(54534708-54534806)
chr3 (370-447)||(1928300-1928377)
chr3 (382-455)||(28702396-28702469)
[»] chr2 (13 HSPs)
chr2 (515-667)||(3895263-3895410)
chr2 (388-455)||(18296204-18296271)
chr2 (388-455)||(18296580-18296647)
chr2 (388-455)||(26841716-26841783)
chr2 (388-454)||(2638950-2639016)
chr2 (389-455)||(2639340-2639406)
chr2 (388-454)||(7591709-7591775)
chr2 (388-455)||(26842096-26842163)
chr2 (304-352)||(6171157-6171205)
chr2 (389-455)||(7591330-7591396)
chr2 (303-352)||(18296076-18296126)
chr2 (304-352)||(6495725-6495774)
chr2 (304-352)||(29230283-29230332)
[»] chr4 (14 HSPs)
chr4 (372-455)||(45830056-45830139)
chr4 (388-455)||(50678907-50678974)
chr4 (372-454)||(36095929-36096011)
chr4 (388-454)||(45829122-45829188)
chr4 (388-455)||(36096333-36096400)
chr4 (388-455)||(50679282-50679349)
chr4 (388-454)||(43050736-43050802)
chr4 (388-454)||(47219064-47219130)
chr4 (303-352)||(22681575-22681624)
chr4 (304-352)||(24775787-24775836)
chr4 (304-355)||(11241390-11241442)
chr4 (304-352)||(11241665-11241713)
chr4 (306-354)||(12757770-12757818)
chr4 (304-352)||(54508816-54508865)
[»] chr8 (14 HSPs)
chr8 (388-455)||(9823219-9823286)
chr8 (388-455)||(13027140-13027207)
chr8 (388-454)||(39723907-39723973)
chr8 (388-455)||(9822877-9822944)
chr8 (388-455)||(13026764-13026831)
chr8 (388-455)||(22851519-22851586)
chr8 (304-349)||(9465608-9465653)
chr8 (316-355)||(6092789-6092828)
chr8 (304-349)||(23123339-23123385)
chr8 (388-454)||(39723531-39723597)
chr8 (326-355)||(3307362-3307391)
chr8 (304-352)||(15156189-15156238)
chr8 (304-352)||(22851391-22851440)
chr8 (307-352)||(43162543-43162588)
[»] chr6 (3 HSPs)
chr6 (388-455)||(33829118-33829185)
chr6 (388-455)||(33829494-33829561)
chr6 (306-355)||(31598729-31598778)
[»] chr1 (11 HSPs)
chr1 (388-455)||(49284537-49284604)
chr1 (102-266)||(25950789-25950953)
chr1 (388-455)||(48190871-48190938)
chr1 (388-455)||(48191243-48191310)
chr1 (388-455)||(49284913-49284980)
chr1 (388-455)||(6002366-6002433)
chr1 (388-455)||(6002751-6002818)
chr1 (304-355)||(41082910-41082962)
chr1 (305-352)||(17518606-17518653)
chr1 (306-355)||(999115-999164)
chr1 (296-352)||(20480160-20480217)
[»] scaffold0328 (2 HSPs)
scaffold0328 (388-455)||(6653-6720)
scaffold0328 (370-455)||(6262-6347)
[»] chr5 (7 HSPs)
chr5 (388-454)||(18817081-18817147)
chr5 (389-455)||(18817469-18817535)
chr5 (390-455)||(11351287-11351352)
chr5 (388-447)||(31570424-31570483)
chr5 (306-352)||(31569910-31569956)
chr5 (306-352)||(10098945-10098991)
chr5 (414-455)||(11350944-11350985)
[»] scaffold0110 (2 HSPs)
scaffold0110 (304-352)||(45538-45586)
scaffold0110 (304-352)||(45811-45859)
[»] scaffold0002 (1 HSPs)
scaffold0002 (304-352)||(411924-411972)
[»] scaffold0001 (1 HSPs)
scaffold0001 (306-352)||(183367-183413)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 42592631 - 42592352
Alignment:
Q  16 atggacgtcttgtattaataatgctaaggattgatttactgaaataaattaagtaaagttacttcaatttatatcagctcagctgatttcatactccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42592631 atggacgtcttgtattaataatgctaaggattgatttactaaaataaattaagtaaagttacttcaatttatatcagctcagctgatttcatactccatg 42592532  T
Q  116 ctttgagattctccacaatgatcggttcagtgccattgttaaacacaaacaaatgagcttgatttgccacggctagtactggataaaccctagacaaaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42592531 ctttgagattctccacaatgatcggttcagtgccattgttaaacacaaacaaattagcttgatttgccacggctagtactggataaaccctagacaaaat 42592432  T
Q  216 gttcgttttacctccttctccaaaactttccaccactgaatgatcaatctggaaattaaaaaatcaatcattaatcaatt 295  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  42592431 gtttgttttacctccttctccaaaactttccaccactgaatgatcaatctgaaaattagaaaatcaatcattaatcaatt 42592352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 357 - 447
Target Start/End: Complemental strand, 46816268 - 46816178
Alignment:
Q  357 tttctagtttgatggcccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatg 447  Q
    ||||| |||||| |||||||||||||||| |||||||||||| |||||||||  |  |||||||||||||| |||||||  ||||||||||    
T  46816268 tttctggtttgaaggcccccatatattttaatgatgatgtgtctaattttgattatgtgtctttatttaatttttgccaattgtgtaaatg 46816178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 13863883 - 13863816
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||    
T  13863883 tgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 13863816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 44600061 - 44599994
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  44600061 tgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 44599994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 389 - 455
Target Start/End: Complemental strand, 8643691 - 8643625
Alignment:
Q  389 gatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    |||||||||||| ||||||| |||||||||| ||||||| ||||||| |||||||||| ||||||||    
T  8643691 gatgatgtgtttgattttgatgacatgtcttcatttaatttttgccacgtgtgtaaatataattttt 8643625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 13863442 - 13863509
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  13863442 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 13863509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 44599618 - 44599685
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  44599618 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 44599685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 27096392 - 27096343
Alignment:
Q  306 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatcc 355  Q
    ||||||| |||||||| || ||||||||||||||||| ||||||||||||    
T  27096392 ttaattgcacttttccccctatcttttgtcaattgtgtgattttgcatcc 27096343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 27181911 - 27181960
Alignment:
Q  306 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatcc 355  Q
    ||||||| |||||||| || ||||||||||||||||| ||||||||||||    
T  27181911 ttaattgcacttttccccctatcttttgtcaattgtgtgattttgcatcc 27181960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 8e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 779 - 879
Target Start/End: Original strand, 54534836 - 54534936
Alignment:
Q  779 ccttcaaactataccaccgaccccaccctatgttcgccgacggcgatggtgactccactgacacactactactctcttcgatctcacactccacttgctt 878  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54534836 ccttcaaactataccaccgaccccaccctatgttcgccgacggcgacggtgactccaccgacacactactactctcttcgatctcacactccacttgctt 54534935  T
Q  879 c 879  Q
    |    
T  54534936 c 54534936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 678 - 783
Target Start/End: Original strand, 54534708 - 54534806
Alignment:
Q  678 cttattgttgagaagattcttgacagcaacatccaacaatagaaccatcttgaataattcctctttatacaattccatatcctccttctcctattacgtt 777  Q
    ||||||||||||||||||||||||||| |||       |||||||||||||||| ||||||||| |||||||||||||||||||||||||| || ||| |    
T  54534708 cttattgttgagaagattcttgacagcgaca-------atagaaccatcttgaagaattcctctgtatacaattccatatcctccttctccgatcacgct 54534800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 1928377 - 1928300
Alignment:
Q  370 ggcccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatg 447  Q
    ||||||||||| ||||  ||||||||||| | ||||||| ||  |||||| ||||||| |||| ||||||||||||||    
T  1928377 ggcccccatatgttttagtgatgatgtgtctgattttgatgatgtgtcttcatttaatttttgacatgtgtgtaaatg 1928300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 455
Target Start/End: Original strand, 28702396 - 28702469
Alignment:
Q  382 ttttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||| ||||||||||| | ||||| | |||||||||| |||||||  ||||||||||| ||||||||| ||||    
T  28702396 ttttggtgatgatgtgtctgattttaatgacatgtcttcatttaatgcttgccatgtgtctaaatgtaactttt 28702469  T

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Target: chr2 (Bit Score: 78; Significance: 7e-36; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 515 - 667
Target Start/End: Original strand, 3895263 - 3895410
Alignment:
Q  515 aagctgcagagaatgctggggagaaagctagagagtagagattatgcttatgttgcaaaggaaagatccaaggaaggagtgagttacatggctgataaga 614  Q
    |||||||||||| |||||||||||||||||||       ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  3895263 aagctgcagagagtgctggggagaaagctaga-------gattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataaga 3895355  T
Q  615 caaaggaaggagctgagaaaac--aagagaagacgagtgagtttgctgggtcggc 667  Q
    |||| |||||||||||||||||    ||||||||| | ||| |||||||||||||    
T  3895356 caaaagaaggagctgagaaaacggcggagaagacgggggaggttgctgggtcggc 3895410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 18296204 - 18296271
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  18296204 tgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 18296271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 18296647 - 18296580
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  18296647 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 18296580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 26841716 - 26841783
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  26841716 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 26841783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 2638950 - 2639016
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 454  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  2638950 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 2639016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 389 - 455
Target Start/End: Complemental strand, 2639406 - 2639340
Alignment:
Q  389 gatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    |||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  2639406 gatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 2639340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 7591775 - 7591709
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 454  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  7591775 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 7591709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 26842163 - 26842096
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||| ||| |||||||||||||||||||    
T  26842163 tgatgatgtgtatgattttgatgacgtgtcttcatttaatgttttccacgtgtgtaaatgtaattttt 26842096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 6171157 - 6171205
Alignment:
Q  304 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 352  Q
    ||||||||| |||||||| || ||||||||| |||||||||||||||||    
T  6171157 gcttaattgcacttttccccctatcttttgttaattgtgcgattttgca 6171205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 389 - 455
Target Start/End: Original strand, 7591330 - 7591396
Alignment:
Q  389 gatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    |||||||||| | ||||||| | | |||||| ||||||| |||||||  ||||||||||||||||||    
T  7591330 gatgatgtgtctgattttgatggcgtgtcttcatttaatgtttgccacatgtgtaaatgtaattttt 7591396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 18296076 - 18296126
Alignment:
Q  303 agcttaattgtacttttc-ctccaatcttttgtcaattgtgcgattttgca 352  Q
    |||||||||||||||||| | || |||||||| ||||||||||||||||||    
T  18296076 agcttaattgtacttttcacccctatcttttgccaattgtgcgattttgca 18296126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 6495774 - 6495725
Alignment:
Q  304 gcttaattgtacttttcctcca-atcttttgtcaattgtgcgattttgca 352  Q
    ||||||||| |||||||||||  ||||||||| |||||||||||||||||    
T  6495774 gcttaattgcacttttcctccctatcttttgtgaattgtgcgattttgca 6495725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 29230283 - 29230332
Alignment:
Q  304 gcttaattgtacttttcctc-caatcttttgtcaattgtgcgattttgca 352  Q
    ||||||||| |||||||||| | ||||||||||||||||| |||||||||    
T  29230283 gcttaattgcacttttcctctctatcttttgtcaattgtgtgattttgca 29230332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 372 - 455
Target Start/End: Complemental strand, 45830139 - 45830056
Alignment:
Q  372 cccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||| ||||  ||||||||||| | ||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||    
T  45830139 cccccatatgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 45830056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 50678907 - 50678974
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  50678907 tgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 50678974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 372 - 454
Target Start/End: Original strand, 36095929 - 36096011
Alignment:
Q  372 cccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 454  Q
    ||||||| ||||||  ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  36095929 cccccatgtattttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 36096011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 45829122 - 45829188
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 454  Q
    ||||||||||| | ||||||| |||||||||| ||||||| ||||||| ||||||||||||||||||    
T  45829122 tgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 45829188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 36096400 - 36096333
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  36096400 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 36096333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 50679349 - 50679282
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  50679349 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 50679282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 43050736 - 43050802
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 454  Q
    ||||||||||||| ||||||| ||| |||||| ||||||| |||| || ||||||||||||||||||    
T  43050736 tgatgatgtgtttgattttgatgacgtgtcttcatttaatgtttgtcacgtgtgtaaatgtaatttt 43050802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 47219130 - 47219064
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 454  Q
    ||||||||||||| ||||||| ||| |||| | ||||||| ||||||| ||||||||||||||||||    
T  47219130 tgatgatgtgtttgattttgatgacgtgtcctcatttaatgtttgccacgtgtgtaaatgtaatttt 47219064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 22681575 - 22681624
Alignment:
Q  303 agcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 352  Q
    |||||||||| ||||| || || |||||||||||||||||||||||||||    
T  22681575 agcttaattgcactttcccccctatcttttgtcaattgtgcgattttgca 22681624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 24775836 - 24775787
Alignment:
Q  304 gcttaattgtacttttcc-tccaatcttttgtcaattgtgcgattttgca 352  Q
    ||||||||| |||||||| ||| |||||||||||||||||||||||||||    
T  24775836 gcttaattgcacttttccctcctatcttttgtcaattgtgcgattttgca 24775787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 11241390 - 11241442
Alignment:
Q  304 gcttaattgtacttttcctcca-atcttttgtcaattgtgcgattttgcatcc 355  Q
    ||||||||| |||||||||||  ||||||||| ||||||||||||||||||||    
T  11241390 gcttaattgcacttttcctccttatcttttgttaattgtgcgattttgcatcc 11241442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 11241713 - 11241665
Alignment:
Q  304 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 352  Q
    |||||||||||||||||| || |||||||| |||||||| |||||||||    
T  11241713 gcttaattgtacttttccccctatcttttgccaattgtgggattttgca 11241665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 12757770 - 12757818
Alignment:
Q  306 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatc 354  Q
    ||||||||||||||||| | ||  |||||||||||||||||||||||||    
T  12757770 ttaattgtacttttccttctatagtttgtcaattgtgcgattttgcatc 12757818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 54508816 - 54508865
Alignment:
Q  304 gcttaattgtactttt-cctccaatcttttgtcaattgtgcgattttgca 352  Q
    ||||||||| |||||| |||||||||||||| |||||||| |||||||||    
T  54508816 gcttaattgcactttttcctccaatcttttgccaattgtgtgattttgca 54508865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 9823286 - 9823219
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||    
T  9823286 tgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 9823219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 13027207 - 13027140
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  13027207 tgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 13027140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 39723973 - 39723907
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 454  Q
    ||||||||||||| ||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  39723973 tgatgatgtgtttgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 39723907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 9822877 - 9822944
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    |||| |||||| | ||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||    
T  9822877 tgatcatgtgtctgattttgatgacgtgtcttcatttaatgtttgccatgtgtgtaaatgtaattttt 9822944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 13026764 - 13026831
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||| ||||||||||||||    
T  13026764 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtctaaatgtaattttt 13026831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 22851519 - 22851586
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| ||| || ||||||| ||||||| |||||||||||||||||||    
T  22851519 tgatgatgtgtctgattttgatgacgtgtgttcatttaatgtttgccacgtgtgtaaatgtaattttt 22851586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 9465608 - 9465653
Alignment:
Q  304 gcttaattgtacttttcctccaatcttttgtcaattgtgcgatttt 349  Q
    ||||||||| ||||||||||| |||||||||||||||||| |||||    
T  9465608 gcttaattgcacttttcctcctatcttttgtcaattgtgcaatttt 9465653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 6092789 - 6092828
Alignment:
Q  316 ttttcctccaatcttttgtcaattgtgcgattttgcatcc 355  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  6092789 ttttccccctatcttttgtcaattgtgcgattttgcatcc 6092828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 23123339 - 23123385
Alignment:
Q  304 gcttaattgtacttttcc-tccaatcttttgtcaattgtgcgatttt 349  Q
    ||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  23123339 gcttaattgcacttttccctcctatcttttgtcaattgtgcgatttt 23123385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 39723531 - 39723597
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 454  Q
    ||||||||||| |  |||||| ||| |||||| ||||||| |||||||| ||||||||| |||||||    
T  39723531 tgatgatgtgtctgtttttgatgacgtgtcttcatttaatgtttgccatatgtgtaaatataatttt 39723597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 355
Target Start/End: Original strand, 3307362 - 3307391
Alignment:
Q  326 atcttttgtcaattgtgcgattttgcatcc 355  Q
    ||||||||||||||||||||||||||||||    
T  3307362 atcttttgtcaattgtgcgattttgcatcc 3307391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 15156238 - 15156189
Alignment:
Q  304 gcttaattgtacttttcctcca-atcttttgtcaattgtgcgattttgca 352  Q
    ||||||||| |||||||| ||  |||||||||||||||||||||||||||    
T  15156238 gcttaattgcacttttcccccctatcttttgtcaattgtgcgattttgca 15156189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 22851391 - 22851440
Alignment:
Q  304 gcttaattgtacttttc-ctccaatcttttgtcaattgtgcgattttgca 352  Q
    ||||||||| ||||||| | || |||||||||||||||||||||||||||    
T  22851391 gcttaattgcacttttcacccctatcttttgtcaattgtgcgattttgca 22851440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 43162588 - 43162543
Alignment:
Q  307 taattgtacttttcctccaatcttttgtcaattgtgcgattttgca 352  Q
    |||||| |||||||| || ||||||||||||| |||||||||||||    
T  43162588 taattgcacttttccccctatcttttgtcaatcgtgcgattttgca 43162543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 33829118 - 33829185
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  33829118 tgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 33829185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 33829561 - 33829494
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  33829561 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 33829494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 31598778 - 31598729
Alignment:
Q  306 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatcc 355  Q
    ||||||| |||||||| || ||||||||| ||||||||||||||||||||    
T  31598778 ttaattgcacttttccccctatcttttgttaattgtgcgattttgcatcc 31598729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 49284537 - 49284604
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  49284537 tgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 49284604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 266
Target Start/End: Original strand, 25950789 - 25950953
Alignment:
Q  102 tttcatactccatgctttgagattctccacaatgatcggttcagtgccattgttaaacacaaacaaatgagcttgatttgccacggctagtactggataa 201  Q
    |||||| |||||||| || || ||||||||| | ||| | |||||||| || || |||||||||||||||||||  |    ||| ||||    |||||||    
T  25950789 tttcatgctccatgcctttagtttctccacagttatctgctcagtgccgttattgaacacaaacaaatgagctttttcattcactgctaccgttggataa 25950888  T
Q  202 accctagacaaaatgttcgttttacctccttctccaaaactttccaccactgaatgatcaatctg 266  Q
    ||||||||||| || || ||||| |||||  |||||||||| |||||||| || |||||||||||    
T  25950889 accctagacaagatatttgttttccctccagctccaaaactctccaccacagagtgatcaatctg 25950953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 48190871 - 48190938
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||||||| |||||| ||||||| |||||||  ||||||||||||||||||    
T  48190871 tgatgatgtgtctgattttgacgacgtgtcttaatttaatgtttgccacttgtgtaaatgtaattttt 48190938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 48191310 - 48191243
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  48191310 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 48191243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 49284980 - 49284913
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  49284980 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 49284913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 6002366 - 6002433
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| ||| || ||||||| ||||||| |||||||||||||||||||    
T  6002366 tgatgatgtgtctgattttgatgacgtgttttcatttaatgtttgccacgtgtgtaaatgtaattttt 6002433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 6002818 - 6002751
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||  |||||| ||||||| ||||||| |||||||||||||||||||    
T  6002818 tgatgatgtgtctgattttgatgatgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 6002751  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 41082910 - 41082962
Alignment:
Q  304 gcttaattgtactttt-cctccaatcttttgtcaattgtgcgattttgcatcc 355  Q
    |||||||||||||||| || || |||||||| |||||||||||||||||||||    
T  41082910 gcttaattgtactttttccccctatcttttgccaattgtgcgattttgcatcc 41082962  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 17518653 - 17518606
Alignment:
Q  305 cttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 352  Q
    |||||||| |||||||| || |||||||| ||||||||||||||||||    
T  17518653 cttaattgcacttttccccctatcttttgccaattgtgcgattttgca 17518606  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 999115 - 999164
Alignment:
Q  306 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatcc 355  Q
    ||||||| |||||||| || ||  ||||||||||||||||||||||||||    
T  999115 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcatcc 999164  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 20480160 - 20480217
Alignment:
Q  296 aagaataag-cttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 352  Q
    ||||||||| |||||||| |||||||| || ||  |||||||||||||||||||||||    
T  20480160 aagaataaggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgca 20480217  T

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Target: scaffold0328 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 6720 - 6653
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  6720 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 6653  T

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Target: scaffold0328; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 370 - 455
Target Start/End: Original strand, 6262 - 6347
Alignment:
Q  370 ggcccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||| | ||||  ||||||||||| | ||||||| ||| |||||| ||||||| |||||||  ||||||||||||||||||    
T  6262 ggcccccatgtgttttagtgatgatgtgtctgattttgatgacttgtcttcatttaatgtttgccacatgtgtaaatgtaattttt 6347  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 18817081 - 18817147
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 454  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  18817081 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 18817147  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 389 - 455
Target Start/End: Complemental strand, 18817535 - 18817469
Alignment:
Q  389 gatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    |||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  18817535 gatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 18817469  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 390 - 455
Target Start/End: Complemental strand, 11351352 - 11351287
Alignment:
Q  390 atgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    ||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  11351352 atgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 11351287  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 31570483 - 31570424
Alignment:
Q  388 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatg 447  Q
    ||||||||||| | ||||||| |||||||||| ||||||| |||| ||||||||||||||    
T  31570483 tgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 31570424  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 31569910 - 31569956
Alignment:
Q  306 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 352  Q
    ||||||| |||||||| || |||||||||||||||||||||||||||    
T  31569910 ttaattgcacttttccccctatcttttgtcaattgtgcgattttgca 31569956  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 10098991 - 10098945
Alignment:
Q  306 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 352  Q
    ||||||| ||||||||||| ||  |||||||||||||||||||||||    
T  10098991 ttaattgcacttttcctcctatagtttgtcaattgtgcgattttgca 10098945  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 11350944 - 11350985
Alignment:
Q  414 tgtctttatttaatatttgccatgtgtgtaaatgtaattttt 455  Q
    |||||| ||||||| ||||||| |||||||||||||||||||    
T  11350944 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 11350985  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 45538 - 45586
Alignment:
Q  304 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 352  Q
    ||||||||| |||||||| || ||||||||| |||||||||||||||||    
T  45538 gcttaattgcacttttccccctatcttttgttaattgtgcgattttgca 45586  T

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Target: scaffold0110; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 45859 - 45811
Alignment:
Q  304 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 352  Q
    ||||||||| |||||||| || |||||||| ||||||||||||||||||    
T  45859 gcttaattgcacttttccccctatcttttgccaattgtgcgattttgca 45811  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 411924 - 411972
Alignment:
Q  304 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 352  Q
    ||||||||| ||||| || || |||||||||||||||||||||||||||    
T  411924 gcttaattgcactttaccccctatcttttgtcaattgtgcgattttgca 411972  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 183367 - 183413
Alignment:
Q  306 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 352  Q
    ||||||| |||||||| || |||||||||||||||| ||||||||||    
T  183367 ttaattgcacttttccccctatcttttgtcaattgtacgattttgca 183413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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