View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2498_high_13 (Length: 411)

Name: NF2498_high_13
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2498_high_13
NF2498_high_13
[»] chr5 (2 HSPs)
chr5 (10-394)||(9603066-9603445)
chr5 (351-394)||(9589103-9589146)
[»] chr8 (13 HSPs)
chr8 (310-396)||(6457979-6458065)
chr8 (15-121)||(6364468-6364574)
chr8 (27-215)||(6452071-6452259)
chr8 (17-112)||(6353604-6353699)
chr8 (17-112)||(6392100-6392195)
chr8 (310-396)||(6451889-6451975)
chr8 (27-213)||(6458166-6458352)
chr8 (17-111)||(7460677-7460771)
chr8 (17-112)||(6290512-6290607)
chr8 (10-123)||(6275749-6275862)
chr8 (45-112)||(6264935-6265002)
chr8 (27-112)||(6411264-6411349)
chr8 (10-126)||(6371294-6371410)
[»] chr2 (3 HSPs)
chr2 (27-112)||(42694396-42694481)
chr2 (343-389)||(42687709-42687755)
chr2 (141-191)||(42687290-42687340)
[»] chr3 (3 HSPs)
chr3 (83-123)||(35706521-35706561)
chr3 (89-123)||(35722349-35722383)
chr3 (87-123)||(35728277-35728313)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 394
Target Start/End: Original strand, 9603066 - 9603445
Alignment:
Q  10 attattctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603066 attagtctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 9603165  T
Q  110 gatcttggtgatccagatgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603166 gatcttggtgatccagatgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaac 9603265  T
Q  210 caactaaaaagggtaaannnnnnnnnnnnnnnnnntttcatatactttaaagactaaatatgagagacaataatgcggttctaatgatattttattgttg 309  Q
    |||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603266 caactaaaaagggtaaa-----aaaaaatattaattttcatatactttaaagactaaatatgagagacaataatgcggttctaatgatattttattgttg 9603360  T
Q  310 acagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttcctta 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603361 acagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttcctta 9603445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 394
Target Start/End: Original strand, 9589103 - 9589146
Alignment:
Q  351 aagagatgaaaattttggacacttgaagtcatctgacttcctta 394  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||    
T  9589103 aagagatgaaaattttggtcacttaaagtcatcagacttcctta 9589146  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 310 - 396
Target Start/End: Complemental strand, 6458065 - 6457979
Alignment:
Q  310 acagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttatg 396  Q
    ||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  6458065 acagatcctaagagtgagaaaccgggtgtgatttatgttccaagagatgaaaattttggtcacttgaagtcatcagacttccttatg 6457979  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 6364574 - 6364468
Alignment:
Q  15 tctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgatct 114  Q
    ||||||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||||||||| | |||||||||||||||||||||||| |    
T  6364574 tctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgattt 6364475  T
Q  115 tggtgat 121  Q
     ||||||    
T  6364474 gggtgat 6364468  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 6452259 - 6452071
Alignment:
Q  27 aagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgatcttggtgatccaga 126  Q
    ||||||| ||||| ||||||||||||||||| || ||| |||| ||||||||||| ||  | || ||||||||||| || |||||||| ||  |||| ||    
T  6452259 aagaagagttgcagaatctaagaggagatggaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgatctcggaaatcctga 6452160  T
Q  127 tgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaacta 215  Q
    ||  |  | |   |||| ||||||  |||||||||| |||||||| ||||| |||||||| |||||||||| |||| ||||||||||||    
T  6452159 tggtggcgacgcccttgttcgtccaatccttggaggatctagcacccatccctaccctcgtagggttagaactggtagaaaaccaacta 6452071  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 6353699 - 6353604
Alignment:
Q  17 tactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 112  Q
    ||||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||||||||| | |||||||| |||||||||||||||    
T  6353699 tactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgat 6353604  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 6392195 - 6392100
Alignment:
Q  17 tactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 112  Q
    ||||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||||| ||| | ||||||||||||||||||||||||    
T  6392195 tactacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgat 6392100  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 396
Target Start/End: Complemental strand, 6451975 - 6451889
Alignment:
Q  310 acagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttatg 396  Q
    ||||||| ||| ||||||| ||| ||||  || |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  6451975 acagatcttaagagtgagaaacctggtgccatttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatg 6451889  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 6458352 - 6458166
Alignment:
Q  27 aagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgatcttggtgatccaga 126  Q
    ||||||| ||||| | ||||||||||||||| |||||| | || ||||||  ||| |||||||||||||||||| | || |||||| | ||  |||||||    
T  6458352 aagaagagttgcagactctaagaggagatggaactggagagcgcaaagaagcggatagagtttatgattatgatatttataatgatttgggaaatccaga 6458253  T
Q  127 tgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaac 213  Q
    ||  | || |   ||||  ||||| |||||||| || || |||||  |||| |||||||| ||||||||||||||| ||||||||||    
T  6458252 tggtggtgacgcacttgtccgtcctgtccttgggggatcaagcacctatccctaccctcgcagggttagaagtggtagaaaaccaac 6458166  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 7460771 - 7460677
Alignment:
Q  17 tactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatga 111  Q
    ||||||||||||||||||||| | | | ||||||||||||| || ||| | || || |||||||| ||| | |||||||||||||||||||||||    
T  7460771 tactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatgggacagaatatatgattatgatgtctacaatga 7460677  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 6290607 - 6290512
Alignment:
Q  17 tactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 112  Q
    ||||| ||||||||||||||| | | | ||||||||||||| || ||| | || || |||||||||||| | |||||||| |||||||||||||||    
T  6290607 tactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgat 6290512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 6275862 - 6275749
Alignment:
Q  10 attattctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 109  Q
    |||| ||||||| ||||||||||| ||| | | | ||||||||||||| || ||| | || ||||||||||||||  | ||||| || ||||||||||||    
T  6275862 attagtctactatagacaagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaat 6275763  T
Q  110 gatcttggtgatcc 123  Q
    ||| | ||||||||    
T  6275762 gatgtgggtgatcc 6275749  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 6265002 - 6264935
Alignment:
Q  45 taagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 112  Q
    ||||||||||||| || ||  | || ||||||||||| |||||||||||||||||||| |||||||||    
T  6265002 taagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgat 6264935  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 6411349 - 6411264
Alignment:
Q  27 aagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 112  Q
    ||||||||||| | | | ||||||||||||| |||||| | || || | |||||| ||| | ||||||||||||||||||||||||    
T  6411349 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgat 6411264  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 6371410 - 6371294
Alignment:
Q  10 attattctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 109  Q
    |||| ||||||||||||||||||| ||| | | | ||||||||||||| || ||  | || ||||||||||| ||  | ||||| || ||||||||||||    
T  6371410 attagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatgtctacaat 6371311  T
Q  110 gatcttggtgatccaga 126  Q
    ||| | ||||| |||||    
T  6371310 gatttgggtgaaccaga 6371294  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 42694481 - 42694396
Alignment:
Q  27 aagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 112  Q
    ||||||||||| | ||| ||||||||||||| || ||| |||| ||||||||||||||| | ||||||||||||||||||||||||    
T  42694481 aagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgat 42694396  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 42687709 - 42687755
Alignment:
Q  343 tatgttccaagagatgaaaattttggacacttgaagtcatctgactt 389  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||    
T  42687709 tatgttccaagagatgaaaattttggtcacttgaagtcctcagactt 42687755  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 42687290 - 42687340
Alignment:
Q  141 ttgctcgtccggtccttggagggtctagcactcatccttaccctcgaaggg 191  Q
    ||||||| || || ||||||||||||||||| |||||||||||||| ||||    
T  42687290 ttgctcgccctgttcttggagggtctagcacacatccttaccctcgcaggg 42687340  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 35706521 - 35706561
Alignment:
Q  83 agagtttatgattatgatgtctacaatgatcttggtgatcc 123  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  35706521 agagtttatgactatgatgtctacaatgatcttggagatcc 35706561  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 35722349 - 35722383
Alignment:
Q  89 tatgattatgatgtctacaatgatcttggtgatcc 123  Q
    ||||||||||||||||||||||||||||| |||||    
T  35722349 tatgattatgatgtctacaatgatcttggagatcc 35722383  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 35728313 - 35728277
Alignment:
Q  87 tttatgattatgatgtctacaatgatcttggtgatcc 123  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  35728313 tttatgactatgatgtctacaatgatcttggagatcc 35728277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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