View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2498_high_16 (Length: 391)

Name: NF2498_high_16
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2498_high_16
NF2498_high_16
[»] chr2 (1 HSPs)
chr2 (48-384)||(41358814-41359142)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 48 - 384
Target Start/End: Original strand, 41358814 - 41359142
Alignment:
Q  48 aaacaaatatatatagagtagtataatccaacagagtacctataatatttgttaattttagttttactaacctgtgtgtctaaatcagatgaagaatttg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358814 aaacaaatatatatagagtagtataatccaacagagtacctataatatttgttaattttagttttactaacctgtgtgtctaaatcagatgaagaatttg 41358913  T
Q  148 tagaaggagaat---cactgagcaaggtgttaaatgacattgatccagagttgttccaattactaacaatctccatccttgcatgcagtggctgtaaacc 244  Q
    |||||| ||||    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41358914 tagaagaagaagaaccactaagcaaggtgttaaatgacattgatccagagttgttcccattactaacaatctccatccttgcatgcagtggctgtaaacc 41359013  T
Q  245 cagtggccacccctcattctaacatcaaatccattgtat--nnnnnnnnncatgaatacaatgaaaattcatgaggaaaattccaaaaactaacatatga 342  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||||             |||||||||||||||||| ||||||    
T  41359014 cagtggccacccctcattctaacatcaaatccattgtataaaaaaaaaaacatgaatacaat-------------gaaaattccaaaaactaatatatga 41359100  T
Q  343 atataatagtcaaaagagtacctgttgagccatgttcatctc 384  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  41359101 atataatagtcaaaagagtacctgttgagccatgttcttctc 41359142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University