View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2498_high_20 (Length: 355)
Name: NF2498_high_20
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 19172203 - 19171869
Alignment:
| Q |
11 |
caaaggtacgctacatttacataaaatcatcctacaaatacatatataacccacttgggttggcatggttggaatatgctcattctcaaagtatcaggtt |
110 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |
|
|
| T |
19172203 |
caaaggtacgccacatttacataaaatcatcctacaaatacatatataacccacttgggttggcatggttggagtatgctcattctcaaggtatcaaatt |
19172104 |
T |
|
| Q |
111 |
cgattctatttggtgtcaatttgggtgattacatcaacataatgatatttctttgttgataaaaacaataatatttcatcatcatcaacttgacattatt |
210 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19172103 |
cgattctatttgg-----------gtgattacatcaacataatgatatttctttgttgataaagacaataatatttcatcatcatcaacttgacattatt |
19172015 |
T |
|
| Q |
211 |
attctttttcaatttatgcgaaataatgaaacaaattatggaatagagaagtaagctcattagctcataactattaattactt----------------- |
293 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19172014 |
attctttttcaatttatgcgaaataatcaaacaaattatggaatagagaagtaaggccattagctcataactattaattacttgtataatcacaattctt |
19171915 |
T |
|
| Q |
294 |
gtattctcagctactactaaaattattgtttactcaacctacaatt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19171914 |
gtattctcagctactactaaaattattgtttactcaacctacaatt |
19171869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 48896581 - 48896538
Alignment:
| Q |
94 |
tctcaaagtatcaggttcgattctatttggtgtcaatttgggtg |
137 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
48896581 |
tctcaaagtatcaggtttgattctatttgatgtcaatttcggtg |
48896538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 31282507 - 31282540
Alignment:
| Q |
105 |
caggttcgattctatttggtgtcaatttgggtga |
138 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
31282507 |
caggttcgattatatttggtgtcaatttgggtga |
31282540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 33899678 - 33899711
Alignment:
| Q |
104 |
tcaggttcgattctatttggtgtcaatttgggtg |
137 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
33899678 |
tcaggttcgattctctttggtgtcaatttgggtg |
33899711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University