View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_high_26 (Length: 330)
Name: NF2498_high_26
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 4628009 - 4628322
Alignment:
| Q |
1 |
atcatattctcttaacccataaacttaatcatcaaacacgccatctaactttttggtttctatttggatacattatcgattgaggaatatataactacat |
100 |
Q |
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| T |
4628009 |
atcatattctcttaacccataaacttaatcatcaaacacgcagcctaactttttggtttctatttggatacattatggattgaggaatatattactacat |
4628108 |
T |
|
| Q |
101 |
aagttattatactttaccatcataactgttgactaccaaattttcatacacttcctttttaatttattaaatcagatcctcaaaaccatactccaacacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4628109 |
aagttattatactttaccatcataactgttgactaccaaattttcatacacttcctttttaatttattaaatcagatcctcaaaaccatactccaacacg |
4628208 |
T |
|
| Q |
201 |
tcatccgccgtacgctatctcattcaaatttcaccacgtcgacactcaatatctgatgtcagagattataactcacttgcattcattcgaaacactcact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4628209 |
tcatccgccgtacgctatctcattcaaatttcaccacgtcgacactcaatatctaatgtcacagattataactcacttgcattcattcgaaacactcact |
4628308 |
T |
|
| Q |
301 |
catcaaccttctct |
314 |
Q |
| |
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|||||||||||||| |
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| T |
4628309 |
catcaaccttctct |
4628322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 302
Target Start/End: Original strand, 4627890 - 4628008
Alignment:
| Q |
181 |
caaaaccatactccaacacgtcatccgccgtacgctatctcattcaaatttcaccacgtcgacactcaatatctgatgtcagagattataactcacttgc |
280 |
Q |
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||||||| || ||| |||||||||||| | |||||||||||||||||| ||||||| || |||||||||| |||||| | |||||||||||| || |
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| T |
4627890 |
caaaaccgtattccgacacgtcatccgtcatacgctatctcattcaaacttcaccatgt---cactcaatatttgatgtggccgcttataactcactagc |
4627986 |
T |
|
| Q |
281 |
attcattcgaaacactcactca |
302 |
Q |
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| T |
4627987 |
attcattcgaaacacacactca |
4628008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 4628317 - 4628427
Alignment:
| Q |
7 |
ttctcttaacccataaacttaatcatcaaacacgccatctaactttttggtt--tctatttggatacattatcgattgaggaatatataactacataagt |
104 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||| |||||||| |||| | ||||||||||||||| |||| | |||||||| |||| ||| || |
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| T |
4628317 |
ttctcttaaccgataaacttaatcat-aaacacgccacctaactttccggttcatatatttggatacatta--gattaatgaatatattactatatatgt |
4628413 |
T |
|
| Q |
105 |
tattatactttacc |
118 |
Q |
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|||||||||||||| |
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| T |
4628414 |
tattatactttacc |
4628427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 26551844 - 26551802
Alignment:
| Q |
174 |
agatcctcaaaaccatactccaacacgtcatccgccgtacgct |
216 |
Q |
| |
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| T |
26551844 |
agatcctcaaaatcatactccaacacgtcatccatcgtacgct |
26551802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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