View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_high_28 (Length: 323)
Name: NF2498_high_28
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_high_28 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 655276 - 655578
Alignment:
| Q |
13 |
aagaatatagctcatctttaccacgacctgacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaat |
112 |
Q |
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| T |
655276 |
aagaaaatagctcatctttcccaa-atctgacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaat |
655374 |
T |
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| Q |
113 |
caaatcatcaacgtaaagactgacaattaggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcga |
212 |
Q |
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| T |
655375 |
caaatcatcaacgtaaagactgacaattaggattttacctctctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcga |
655474 |
T |
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| Q |
213 |
acgaagtaggattctatgcgactggaccatgctcgcggagcctgtttcagtccgtctgaagctttatttagcttatataccttttcttcttctcccttca |
312 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
655475 |
acgaagtaggattctatgcgactgtaccatgctcgcggagcctgtttcagtccgtataaagctttatttagcttatataccttttcttcttctcccttct |
655574 |
T |
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| Q |
313 |
tctc |
316 |
Q |
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|||| |
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| T |
655575 |
tctc |
655578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 14247031 - 14246936
Alignment:
| Q |
59 |
catcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
154 |
Q |
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| T |
14247031 |
catcattgagtttttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
14246936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 11850614 - 11850427
Alignment:
| Q |
42 |
gacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaatta |
141 |
Q |
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| T |
11850614 |
gacatgtcaaattctaccatcattgaatttttaaattcatcacacatatttatatcattcccggtatatattaaatcatctacataaagacttactatta |
11850515 |
T |
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| Q |
142 |
ggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctat |
229 |
Q |
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| T |
11850514 |
gaatcttgtttccttcctttgtttttgtaaacaatgtatgttcacaaaaacatttttcaaaaccttctcgaacaaagtatgcttctat |
11850427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 5877310 - 5877123
Alignment:
| Q |
42 |
gacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaatta |
141 |
Q |
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|||||||||||||| ||||||||| | |||||||| ||||| ||| || ||||||||| ||||| || |||||||| || |||| ||| || |||| |
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| T |
5877310 |
gacatgtcaaattctaccatcattgaatttttaaattcatcacacatatttatatcattcctggtatatattaaatcatctacataaacacttactatta |
5877211 |
T |
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| Q |
142 |
ggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctat |
229 |
Q |
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| T |
5877210 |
gaatcttgtttccttcctttgtttttgtaaacaatgtatgttcacaaaaacatttttcaaaaccttctcgaacaaagtatgcttctat |
5877123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 964 - 1046
Alignment:
| Q |
72 |
ttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
154 |
Q |
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| T |
964 |
ttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
1046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 6408 - 6490
Alignment:
| Q |
72 |
ttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
154 |
Q |
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| T |
6408 |
ttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
6490 |
T |
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