View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_high_34 (Length: 299)
Name: NF2498_high_34
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 48729286 - 48729021
Alignment:
| Q |
16 |
atgaaggacatgttgatcaaagcaggagctttgcatggtttttcacttgctcctactccgcttcacgaagagctacgatcaaaaatcacatttaacgaga |
115 |
Q |
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| T |
48729286 |
atgaaggacatgttgatcaaagcaggagctttgcatggtttttcacttgctcctactccgcttcacgaagagctacaatcaaaaatcacatttaacgaga |
48729187 |
T |
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| Q |
116 |
gaatagcaatttgtgttactcgtttaagaaggagaatttcaagtgacacaagaaacgctttgttagtagttgctattcttttcgcaacaagtgcatatga |
215 |
Q |
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| T |
48729186 |
gaatagcaatttgtgttactcgtttaagaaggagaatttcaagtgacacaagaaacgctttgttagtagttgctattcttttcgcaacaagtgcatatga |
48729087 |
T |
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| Q |
216 |
agcaacacttaaccctccagctggtggagggaaattagtgatgatgaaaatgcatacatacttctt |
281 |
Q |
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| T |
48729086 |
agcaacacttaaccctccagctggtggggggaaattagtgatgatgaaaatgcatacatacttctt |
48729021 |
T |
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