View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_high_4 (Length: 671)
Name: NF2498_high_4
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_high_4 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 639; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 1 - 671
Target Start/End: Complemental strand, 36171347 - 36170677
Alignment:
| Q |
1 |
ctgattacaatcaacataatggtgtgtgctactgttatcataggcaaaggccaatgaaattaaacagaaagcatattgaatagggataaacaaattagca |
100 |
Q |
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| T |
36171347 |
ctgattacaatcaacataatggtgtgtgctactgttatcataggcaaaggccaatgaaattaaacagaaagcatattgaatagggataaacaaattagca |
36171248 |
T |
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| Q |
101 |
aaacttgtaagacactaaagtaaatatacagttnnnnnnnngagagaaaaataattgatgaattacattcatgagtgccagattccattcaacatactgc |
200 |
Q |
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| T |
36171247 |
aaacttgtaagacactaaagtaaatatacagttaaaaaaaagagagaaaaataattgatgaattacattcatgagtgccagattccattcaacatactgc |
36171148 |
T |
|
| Q |
201 |
ggaatctgtttgtggatagtttcttgacaagttttttagcatcacaagatacttcagcatctgctagtttgtctatgtttttggcataaccagagctaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171147 |
ggaatctgtttgtggatagtttcttgacaagttttttagcatcacaagatacttcagcatctgctagtttgtctatgtttttggcataaccagagctaac |
36171048 |
T |
|
| Q |
301 |
aatctttttccttgcactattgcaacttgtcaatgacattaagatagagattaagaactttttgttacctgaatttccctcttctggatcaagcaattgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171047 |
aatctttttccttgcactattgcaacttgtcaatgacattaagatagagattaagaactttttgttacctgaatttccctcttctggatcaagcaattgc |
36170948 |
T |
|
| Q |
401 |
agaagcagggctatgttatgatcatcttgaacaaacctctttctatttctaggtaccgtgaccatgccggagagtgcttcagctgccatttcgcgaactt |
500 |
Q |
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| T |
36170947 |
agaagcagggctatgttatgatcatcttgaacaaacctctttctatttctaggtaccgtgaccatgccggagagtgcttcagctgccatttcgcgaactt |
36170848 |
T |
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| Q |
501 |
caaatgatttcgcattgagaaacttaacaaattctgccataaaaccggcatctcccattgctttcttagcttcttcggatgttccagataatctaaatgc |
600 |
Q |
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| T |
36170847 |
caaatgatttcgcattgagaaacttaacaaattctaccataaaaccggcatctcccattgctttcttagcttcttcggatgttccagataatctaaatgc |
36170748 |
T |
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| Q |
601 |
cactttcaaagccaactcttgaatcgaaacttcaccgtgtcgaacataatatagcaactgatccacaaaac |
671 |
Q |
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| T |
36170747 |
cactttcaaagctaactcttgaatcgaaacttcaccgtgtcgaacataatatagcaactgatccacaaaac |
36170677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 671
Target Start/End: Original strand, 1285694 - 1286365
Alignment:
| Q |
1 |
ctgattacaatcaacataat----ggtgtgtgctactgttatcataggcaaaggccaatgaaattaaacagaaagcatattgaatagggataaacaaatt |
96 |
Q |
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| T |
1285694 |
ctgattacaatcaacataattaatggtatgtcctactgttgtcatagacaa-ggccaatgaaataaaacagaaagcatattgaatggggataaacaaatt |
1285792 |
T |
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| Q |
97 |
agcaaaacttgtaagacactaaagtaaatatacagttnnnnnnnngagagaaaaataattgatgaattacattcatgagtgccagattccattcaacata |
196 |
Q |
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| T |
1285793 |
agcaaaatttgtaagacactaaagtaa-tatacagttttaaaaaa-agataaaaataattgatgaattacattcatgagtgccggattccattcaacata |
1285890 |
T |
|
| Q |
197 |
ctgcggaatctgtttgtggatagtttcttgacaagttttttagcatcacaagatacttcagcatctgctagtttgtctatgtttttggcataaccagagc |
296 |
Q |
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|| |||||| |||||||||||| |||||||||| ||||||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
1285891 |
cttcggaatttgtttgtggataatttcttgacaggttttttaggatcacaagaaatttcagcctctgctagtttgtctatgtttttggcataaccagaac |
1285990 |
T |
|
| Q |
297 |
taacaatctttttccttgcactattgcaacttgtcaatgacattaagatagagattaagaactttttgttacctgaatttccctcttctggatcaagcaa |
396 |
Q |
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| T |
1285991 |
taacaatctttttccgtgcactattgcaacttgtcaatgacattaagatagagattaagaactttttgttacctgaatttccctcttctggatcaagcaa |
1286090 |
T |
|
| Q |
397 |
ttgcagaagcagggctatgttatgatcatcttgaacaaacctctttctatttctaggtaccgtgaccatgccggagagtgcttcagctgccatttcgcga |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
1286091 |
ttgcagaagcagggctatgttatgatcatcttgaacaaacctctttctatttctaggtactgtgactatgccggagagtgcttcagctgccatttctcga |
1286190 |
T |
|
| Q |
497 |
acttcaaatgatttcgcattgagaaacttaacaaattctgccataaaaccggcatctcccattgctttcttagcttcttcggatgttccagataatctaa |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1286191 |
acttcaaatgatttcgcattgagaaacttaacaaattcttccataaaaccggcatctcccattgctttcttagcttcttcggatgttccagataatctaa |
1286290 |
T |
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| Q |
597 |
atgccactttcaaagccaactcttgaatcgaaacttcaccgtgtcgaacataatatagcaactgatccacaaaac |
671 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1286291 |
atgccactttcaaagccaactcttgaatcgaaacttcaccgtgtcgaacataatatagcaactgatccacaaaac |
1286365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 569570 - 569628
Alignment:
| Q |
350 |
attaagaactttttgttacctgaatttccctcttctggatcaagcaattgcagaagcag |
408 |
Q |
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| T |
569570 |
attaagaactttttgttacctgtatgttcctcttctagatcaagcaattgcagcagcag |
569628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 569446 - 569505
Alignment:
| Q |
217 |
tagtttcttgacaagttttttagcatcacaagatacttcagcatctgctagtttgtctat |
276 |
Q |
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||||||| ||||||||||||||||||| |||| |||||||| ||||| ||||| ||||| |
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| T |
569446 |
tagtttccagacaagttttttagcatcagaagaaacttcagcctctgccagtttctctat |
569505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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