View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_high_40 (Length: 266)
Name: NF2498_high_40
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 2425071 - 2424819
Alignment:
| Q |
1 |
tattcagttgttggattatttgttagggcatagacaagaagcgctttttcgcagagctgagttgaaaacacttgtaaatttacatggtaatgaggtatat |
100 |
Q |
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| T |
2425071 |
tattcagttgttggattatttgttagggcatagacaagaagcgctttttcgcagagctgagttgaaaacacttgtaaatttgcatggtaatgaggtatat |
2424972 |
T |
|
| Q |
101 |
atcatagctacatgnnnnnnnagattgatcaattgattcagtggctttgagacaatttcagagactaaattcgccgaatccaaaagactaatgtgattgg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
2424971 |
atcatagctacatgtttttttagattgatcaattgattcagtggcttcgagacaatttcagagactaaattcgccaagtccaaaagactaatgtgattga |
2424872 |
T |
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| Q |
201 |
tgattttaactctagaattgtttaggaattttaagaccaaattattgttgttg |
253 |
Q |
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| T |
2424871 |
tgattttaactctagaattgtttaggaattttaagaccaaattattgttgttg |
2424819 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 36723656 - 36723747
Alignment:
| Q |
5 |
cagttgttggattatttgttagggcatagacaagaagcgctttttcgcagagctgagttgaaaacacttgtaaatttacatggtaatgaggt |
96 |
Q |
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||||||||||| |||||| | || ||| || | ||||| ||||| |||||||| |||||||||||||| ||| |||| |||||||||||||| |
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| T |
36723656 |
cagttgttggactatttgctgggtcatcgaaatgaagcccttttccgcagagccgagttgaaaacactagtagatttgcatggtaatgaggt |
36723747 |
T |
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