View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_high_41 (Length: 264)
Name: NF2498_high_41
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 47527985 - 47528237
Alignment:
| Q |
1 |
ccttaacctgtgttataaaccatgactttaatcctcgagtgaggatttgctatttcattgttgttttgattatgaatttgtgagttgttgtgtagctcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47527985 |
ccttaacctgtgttataaaccatgactttaatcctcgagtgaggatttgctatttcattgttgttttgattatgaatttgtgagttgttgtgtagctcaa |
47528084 |
T |
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| Q |
101 |
tgacaaaaaatatgatcagctacgtgaaattgagcagaagttaaatgagactatagatcccgtttacattaagcgggatgagatgatcaaatctattcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47528085 |
tgacaaaaaatatgatcagctacgtgaaattgagcagaagttaaatgagactatagatcccgtttacattaagcgggatgagatgatcaaatctattcct |
47528184 |
T |
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| Q |
201 |
aacttctggttgaatgctgtgggtattttctatctacatgttttccctttgct |
253 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47528185 |
aacttctggttgaatgctgtgagtattttctatctacatgttttccctttgct |
47528237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 44983980 - 44983877
Alignment:
| Q |
126 |
gaaattgagcagaagttaaatgagactatagatcccgtttacattaagcgggatgagatgatcaaatctattcctaacttctggttgaatgctgtgggta |
225 |
Q |
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|||||||||||||||| ||||||| || | || |||||| ||||||| | ||||| ||||||||||||||| | |||||||||||||||||| ||| |
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| T |
44983980 |
gaaattgagcagaagtataatgagattaggaagccggtttacgataagcggaacgagattatcaaatctattcctgatttctggttgaatgctgtgagta |
44983881 |
T |
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| Q |
226 |
tttt |
229 |
Q |
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|||| |
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| T |
44983880 |
tttt |
44983877 |
T |
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