View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_high_43 (Length: 253)
Name: NF2498_high_43
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_high_43 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 41298333 - 41298099
Alignment:
| Q |
19 |
agggattggccatgggaacaagtgagagttgagactcggcagtaactacagcagctttaccagtgccttcctcaagtgttgtgttgtcttttttcttctt |
118 |
Q |
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| T |
41298333 |
agggattggccatgggaacaagtgagagttgagactcggcagtaactacagcagctttaccagtgccttcctcaagtgttgtgttgtcttttttcttctt |
41298234 |
T |
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| Q |
119 |
ggcttgcagctcatgccaccattctggatacccatgtaacttgaaacatgtatcacgagtgtgtttgacatttccacaatgagtgcaccttcctccatcg |
218 |
Q |
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| T |
41298233 |
ggcttgcagctcatgccaccattctggatacccatgtaacttgaaacatgtatcacgagtgtgtctgacatttccacaatgagttcactttcctccatca |
41298134 |
T |
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| Q |
219 |
gacgaacccttcgactttgagaaaaagttgttttt |
253 |
Q |
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| T |
41298133 |
gacgaacccttcgactttgagaaaaagttgttttt |
41298099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 15668848 - 15668901
Alignment:
| Q |
128 |
ctcatgccaccattctggatacccatgtaacttgaaacatgtatcacgagtgtg |
181 |
Q |
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| T |
15668848 |
ctcattccaccattctggatacccatgcaacttgaagcatgtgtcacgggtgtg |
15668901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 5864281 - 5864334
Alignment:
| Q |
128 |
ctcatgccaccattctggatacccatgtaacttgaaacatgtatcacgagtgtg |
181 |
Q |
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| T |
5864281 |
ctcattccaccattctggatacccatgcaacttgaagcatgtgtcacgggtgtg |
5864334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 34171265 - 34171318
Alignment:
| Q |
128 |
ctcatgccaccattctggatacccatgtaacttgaaacatgtatcacgagtgtg |
181 |
Q |
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| T |
34171265 |
ctcattccaccattctggatacccatgcaacttgaagcatgtgtcacgggtgtg |
34171318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 526026 - 526097
Alignment:
| Q |
134 |
ccaccattctggatacccatgtaacttgaaacatgtatcacgagtgtgtttgacatttccacaatgagtgca |
205 |
Q |
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| T |
526026 |
ccaccattctgggtacccatgtaacttgaaacaagtttcatgtgtatgcttcaactttccacaatgagtgca |
526097 |
T |
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