View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_high_47 (Length: 249)
Name: NF2498_high_47
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_high_47 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 31118060 - 31118298
Alignment:
| Q |
10 |
atgaaaacctatcatgacacgtggcatgattattcggatttaggcataatgtccacgtgggtcccattaggacaagcatgtgtcatagagagggggaaag |
109 |
Q |
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| T |
31118060 |
atgaaaacctatcatgacacgtggcatgattattcggatttaggcataatgtccacgtgggtcccattaggacaagcatgtgtcatggagagggg-aaag |
31118158 |
T |
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| Q |
110 |
ggatggaaaacaagtgagagcacatggagagagcatcctatatttttcccttataaatagccctttcatacgttacatgttccaacacacacatctttta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31118159 |
ggatggaaaacaagtgagagcacatggagagagcatcctatatttttcccttataaatagccctttcatacgttacatgttccaacacacacatctttta |
31118258 |
T |
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| Q |
210 |
ccgatcacgtgctttcctcttctttttctctgctctttct |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
31118259 |
tcgatcacgtgctttcctcttctttttctctgctctttct |
31118298 |
T |
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