View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2498_high_56 (Length: 239)

Name: NF2498_high_56
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2498_high_56
NF2498_high_56
[»] chr5 (12 HSPs)
chr5 (8-219)||(2843944-2844155)
chr5 (8-219)||(2855777-2855988)
chr5 (98-215)||(2903986-2904103)
chr5 (98-215)||(2873480-2873597)
chr5 (90-223)||(9004408-9004541)
chr5 (95-215)||(8547078-8547198)
chr5 (95-215)||(8678783-8678903)
chr5 (109-206)||(8637939-8638036)
chr5 (91-215)||(8529976-8530100)
chr5 (106-215)||(8645275-8645384)
chr5 (95-206)||(1599241-1599352)
chr5 (95-215)||(9073673-9073793)
[»] chr7 (1 HSPs)
chr7 (95-212)||(48360794-48360911)
[»] chr4 (1 HSPs)
chr4 (91-206)||(9444146-9444261)
[»] scaffold0627 (1 HSPs)
scaffold0627 (157-206)||(5669-5718)
[»] chr6 (1 HSPs)
chr6 (157-206)||(16717382-16717431)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 2843944 - 2844155
Alignment:
Q  8 aagcaaagggagagggaaaagttgcatgtcctactatccgaagctgcaataaagtaaaagggaatggaaaattcgatgatgcaagtcatgaactttgccc 107  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2843944 aagcaaaaggagagggaaaagttgcatggcctactatccgaagctgcaataaagtaaaagggaatggaaaatttgatgatgcaagtcatgaactttgccc 2844043  T
Q  108 ttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaaaatttggaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2844044 ttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaaaatttggaat 2844143  T
Q  208 acacttatatca 219  Q
    ||||||||||||    
T  2844144 acacttatatca 2844155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 2855777 - 2855988
Alignment:
Q  8 aagcaaagggagagggaaaagttgcatgtcctactatccgaagctgcaataaagtaaaagggaatggaaaattcgatgatgcaagtcatgaactttgccc 107  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  2855777 aagcaaaaggagagggaaaagttgcatggcctactatccgaagctgcaataaagtaaaagggaaaggaaaatttgatgatgcaagtcatgaactttgccc 2855876  T
Q  108 ttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaaaatttggaat 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2855877 ttactttgataattttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaaaatttggaat 2855976  T
Q  208 acacttatatca 219  Q
    ||||||||||||    
T  2855977 acacttatatca 2855988  T

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Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 2903986 - 2904103
Alignment:
Q  98 aactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaa 197  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2903986 aactttgtccttactttgataatcttccatttcacttaactaccgaaattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaa 2904085  T
Q  198 aatttggaatacacttat 215  Q
    ||||||||||||||||||    
T  2904086 aatttggaatacacttat 2904103  T

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Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 2873480 - 2873597
Alignment:
Q  98 aactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaa 197  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||  | ||||||||||||||||||||||| |||||||||||||||||    
T  2873480 aactttgcccttactttgataatcttccatctcacttaactacccacattcttcttcaacttcccattaagtctcttctcatgtgtagatgtgtgtgcaa 2873579  T
Q  198 aatttggaatacacttat 215  Q
    || |||||||||||||||    
T  2873580 aacttggaatacacttat 2873597  T

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Target: chr5; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 9004541 - 9004408
Alignment:
Q  90 aagtcatgaactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgt 189  Q
    |||||||||||||||||||||||||| |||||||||||||||  | |||| ||||||||| ||  | |||||||||||||||||||| || |||||||||    
T  9004541 aagtcatgaactttgcccttactttgctaatcttccatctcacctcactaaccacattctgcttcatcttcccattaagtctcttcttatttgtagatgt 9004442  T
Q  190 gtgtgcaaaatttggaatacacttatatcataac 223  Q
    |||||||| |||||||| ||| |||| |||||||    
T  9004441 gtgtgcaagatttggaaaacaattatttcataac 9004408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 8547078 - 8547198
Alignment:
Q  95 atgaactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtg 194  Q
    |||||||||||||||| ||||||||||||||||||||  | ||| |||||||||| || || |||| ||| |||||||||||||| |||| |||||| ||    
T  8547078 atgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtttg 8547177  T
Q  195 caaaatttggaatacacttat 215  Q
    ||| |||||||| ||| ||||    
T  8547178 caagatttggaaaacaattat 8547198  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 8678903 - 8678783
Alignment:
Q  95 atgaactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtg 194  Q
    |||||||||  ||||||||||||||||||||||| ||  | | | |||||||| | ||  | ||||||||||| ||||||||||| |||| |||||||||    
T  8678903 atgaactttatccttactttgataatcttccatcacacatcattgcccacattttgcttcatcttcccattaaatctcttctcatttgtaaatgtgtgtg 8678804  T
Q  195 caaaatttggaatacacttat 215  Q
    ||| |||||||| ||||||||    
T  8678803 caagatttggaaaacacttat 8678783  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 8638036 - 8637939
Alignment:
Q  109 tactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaaaatttggaa 206  Q
    |||||||||||||||||||| ||  | || ||||| ||||| ||  | ||| ||||||||||||||||||| |||| |||||||||||| ||||||||    
T  8638036 tactttgataatcttccatcccacatcaccacccaaattctgcttcaactttccattaagtctcttctcatttgtaaatgtgtgtgcaagatttggaa 8637939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 8530100 - 8529976
Alignment:
Q  91 agtcatgaactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtg 190  Q
    |||| ||| ||||||||||| |||||||| ||||| |||||  | ||| |||||||||||||    |||||  |||||||| ||||||| |||| |||||    
T  8530100 agtcgtgagctttgcccttattttgataaacttccgtctcacctcactgcccacattctccttcgacttccatttaagtctgttctcatttgtaaatgtg 8530001  T
Q  191 tgtgcaaaatttggaatacacttat 215  Q
    |||||||| ||||||| ||| ||||    
T  8530000 tgtgcaaagtttggaaaacaattat 8529976  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 8645384 - 8645275
Alignment:
Q  106 ccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaaaatttgga 205  Q
    ||||||||||||||||||||||| ||  | | | |||||||  | ||  | ||||||||||| ||||||||||| |||  |||||||||||| |||||||    
T  8645384 ccttactttgataatcttccatcacacatcattgcccacatgttgcttcatcttcccattaaatctcttctcatttgtgaatgtgtgtgcaagatttgga 8645285  T
Q  206 atacacttat 215  Q
    | ||||||||    
T  8645284 aaacacttat 8645275  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 1599241 - 1599352
Alignment:
Q  95 atgaactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtg 194  Q
    ||||| ||| |||||  |||||||||||| |||||||  | ||| ||| |||||| ||  | ||||| |||||||| |||||||| |||| || ||||||    
T  1599241 atgaagttttccctttttttgataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttctcatttgtaaatctgtgtg 1599340  T
Q  195 caaaatttggaa 206  Q
    ||||||||||||    
T  1599341 caaaatttggaa 1599352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 9073673 - 9073793
Alignment:
Q  95 atgaactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtg 194  Q
    ||||||||| |||||  ||||| ||||||||||||||  | ||| || | ||||| ||    |||||| | ||| |||||||||| |||| |||||||||    
T  9073673 atgaacttttccctttttttgacaatcttccatctcacctcactgccaatattctgcttcgacttcccgtcaagcctcttctcatttgtaaatgtgtgtg 9073772  T
Q  195 caaaatttggaatacacttat 215  Q
    |||||||||||| | ||||||    
T  9073773 caaaatttggaaaagacttat 9073793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 48360794 - 48360911
Alignment:
Q  95 atgaactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtg 194  Q
    |||||||||||||||| |||||||||||||||| |||  | ||| |||||||||||||  | |||||||||||||||||||| || |||| || ||||||    
T  48360794 atgaactttgcccttattttgataatcttccatatcacctcactgcccacattctccttcaacttcccattaagtctcttcttatttgtaaatctgtgtg 48360893  T
Q  195 caaaatttggaatacact 212  Q
    |||||||||||| |||||    
T  48360894 caaaatttggaaaacact 48360911  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 9444261 - 9444146
Alignment:
Q  91 agtcatgaactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtg 190  Q
    |||| ||| ||||||||||| |||||||||||||| |||||  | ||| |||||||||||||    |||||  |||||||| ||||||| |||| || ||    
T  9444261 agtcgtgagctttgcccttattttgataatcttccgtctcacctcactgcccacattctccttcgacttccatttaagtctgttctcatttgtaaatctg 9444162  T
Q  191 tgtgcaaaatttggaa 206  Q
    |||||||| |||||||    
T  9444161 tgtgcaaagtttggaa 9444146  T

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Target: scaffold0627 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 5718 - 5669
Alignment:
Q  157 cttcccattaagtctcttctcatatgtagatgtgtgtgcaaaatttggaa 206  Q
    |||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  5718 cttcccatcaagtctcttctcatttgtaaatgtgtgtgcaaaatttggaa 5669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 16717431 - 16717382
Alignment:
Q  157 cttcccattaagtctcttctcatatgtagatgtgtgtgcaaaatttggaa 206  Q
    |||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  16717431 cttcccatcaagtctcttctcatttgtaaatgtgtgtgcaaaatttggaa 16717382  T

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