View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2498_high_57 (Length: 238)
Name: NF2498_high_57
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_high_57 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 32396450 - 32396671
Alignment:
| Q |
17 |
aaatttcaggattagcaatttatatggccaccttcaagcctaagtttgattagaaatggtacaactgccttgaaaaatttacttgcttttttaccccacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32396450 |
aaatttcaggattagcaatttatatggccaccttcaagcctaagtttgattagaaatggtacaactgccttgaaaaatttacttgcttttttaccccacc |
32396549 |
T |
|
| Q |
117 |
tataaattattggcaaaactattaaaacatataagatcaatggtttggctatagacattatcatgtgtatattcggtttcacttacgcacgaggcaaatt |
216 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
32396550 |
tattaattattggcaaaactattaaaacatataagatcaatggtttggctatagacattattatgtgtatatttggtttcactttcgcacgaggcaaatt |
32396649 |
T |
|
| Q |
217 |
tttcggaggtgtataattgatt |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
32396650 |
tttcggaggtgtataattgatt |
32396671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University