View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_high_65 (Length: 225)
Name: NF2498_high_65
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_high_65 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 11825393 - 11825589
Alignment:
| Q |
16 |
gctacaacctagattttgtgtcgaaaaaatcaatacgtttgtaaaactcaagcctacccaattcatatatttagttctggaaccattccgttgacttaga |
115 |
Q |
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| T |
11825393 |
gctacaacctagattttgtgtcgaaaaaatcaacacgtttgtaaaactcaagcctaccgaattcatatatttagttctggaaccattccgttgacttaga |
11825492 |
T |
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| Q |
116 |
ctcgcaatttagcttattccgcaaaatacgtgccaaaacccgtaagcatttttccagcagaaaacccaacttcaaaaccactttctgagttcatttc |
212 |
Q |
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| T |
11825493 |
ctcgcaatttaacttattccgcaaaatacgcgccaaaacccgtaagcatttttccagcagaaaacccaacttcaaaagcactttccgagttcgtttc |
11825589 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 14175701 - 14175611
Alignment:
| Q |
88 |
agttctggaaccattccgttgacttagactcgcaatttagcttattccgcaaaatacgtgccaaaacccgtaagcatttttccagcagaaa |
178 |
Q |
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| T |
14175701 |
agttctggagccattccatcaactaaaactcacagtatagcttattccgcaaaatctacatcaaaacccgtaagcatttttccagcagaaa |
14175611 |
T |
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