View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_11 (Length: 515)
Name: NF2498_low_11
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 77 - 503
Target Start/End: Original strand, 49589787 - 49590213
Alignment:
| Q |
77 |
tacagtacaattatgattcccccttgtttgagtgtgtccttactcttaatattcattaaatacttgcacatatgatgtgattttcattcataacttatcg |
176 |
Q |
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| T |
49589787 |
tacagtacaattatgcttccaccttgtttgagtgtgtcctcactcttaatattcattaaatacttgcacatatgatgtgattttcattcataacttatcg |
49589886 |
T |
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| Q |
177 |
gtgggtgcttgtaagcgtgttcgcagcgtggtttggatcatttatgaagtgaaaaaatgatcaaattcaaaaattaaattacttgcttaatgatgaacat |
276 |
Q |
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| T |
49589887 |
gtgggtgcttgtaagcgtgttcgcagtgtggtttggatcatttatgaagtgaaaaaatgatcaaattcaaaaattaaattacttgctcaatgatgaacat |
49589986 |
T |
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| Q |
277 |
aaataataatctaagaaatcaaaaggttacgtgttaaatatactgaacattgcctgctttcctattgcaataattagacccatcatgattgtagggatca |
376 |
Q |
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| T |
49589987 |
aaataataatctaagaaatcaaaaggttaagtgttaaatatactgaacattgcctgctttcctattgcaataattagacccatcgtgattgtagggatca |
49590086 |
T |
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| Q |
377 |
ggataattgtctcaatcatatccatttttaaccactaattccattttatcctattgtattttgtaagacaatagtacaatacactcaactcaggagtaca |
476 |
Q |
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| T |
49590087 |
ggataattgtctcaatcatatccatttttaaccactaattccattttatcctattgtattttgtaagacaatagtacaatacactcaactcacgagtaca |
49590186 |
T |
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| Q |
477 |
tcatcacaagaaagcattgttattatt |
503 |
Q |
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| T |
49590187 |
tcatcacaagaaagcattgttattatt |
49590213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 49588527 - 49588608
Alignment:
| Q |
1 |
ggtgttgttcataaaaaagagaagagcaaacagtttgccttagaaccaaatatatttaaatatttagacaggtgaatacagt |
82 |
Q |
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| T |
49588527 |
ggtgttgttcataaaaaagagaagagcaaacagtttgccttagaaccaaatatatttaaatatttggacaggtgaatgcagt |
49588608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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