View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_12 (Length: 473)
Name: NF2498_low_12
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 455
Target Start/End: Complemental strand, 27593352 - 27592885
Alignment:
| Q |
13 |
aatattagaatgtaggacccgttttacattatgaaaatattttcacatttcattttcttaaacttccagtccttttaaagttctaacaa----------- |
101 |
Q |
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| T |
27593352 |
aatattagaatgtagaacccgttt-acattatgaaaatatttccacatttcattttcttaaacttccagtccttttaaagttctaacaatgacattttaa |
27593254 |
T |
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| Q |
102 |
-----------ggagatggaagacttgcatggtaacatttgtggtagaggataatacgaaaactgaagaaaatgcatttttagaaacaataaaaataatg |
190 |
Q |
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| T |
27593253 |
gttgctaacaaggacatggaagacttgcatggtaacatttgtggtagag-ataatacgaaaactgaagaaaatgcatttttagaaacaataaaaataatg |
27593155 |
T |
|
| Q |
191 |
tttggacattttnnnnnnnntctaaaaatgctag----aattcttttaaaaaagtatgaggtatatatttgatctatattctcnnnnnnnnattattagt |
286 |
Q |
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| T |
27593154 |
tttggacattttaaaaaaaatctaaaaatgctagaattaattcttttaaaaaagtatgaggtatatatttgatctatattctc-tttttttattattagt |
27593056 |
T |
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| Q |
287 |
ttaatgaaaatataaataaattgagagtaaacatgccttaatacaaaactaagagattacttgtgggaa--gnnnnnnnnnctagatattaacggagcac |
384 |
Q |
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| T |
27593055 |
ttaatgaaaatataaataaattgagagtaaacatgccttaatacaaaactaagagattacttgtgggaaagaaaaaaaaaactagatattaacggagcac |
27592956 |
T |
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| Q |
385 |
aaagcatactcaatccatatacaaaacagctacccaacatatggagaagataaacacataaaattaaaagg |
455 |
Q |
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| T |
27592955 |
aaagcatactcaatccgtatacaaaacagctacccaacatatggagaagataaacacataaaattaaaagg |
27592885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 35145769 - 35145873
Alignment:
| Q |
95 |
ctaacaaggagatggaagacttgcatggtaacatttgtggtagaggataatacgaaaactgaagaaaatgcatttttagaaacaataaaaataatgtttg |
194 |
Q |
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| T |
35145769 |
ctaacaaggacatggaagactcgcatagtaacaattgtggtaga-gataaaacaaaatctggaaaaaatgcattttcagaaaaaataaaagtaatgtttg |
35145867 |
T |
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| Q |
195 |
gacatt |
200 |
Q |
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||||| |
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| T |
35145868 |
aacatt |
35145873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 35145687 - 35145756
Alignment:
| Q |
35 |
tttacattatgaaaatattttcacatttcattttcttaaacttccagtccttttaaagttctaacaagga |
104 |
Q |
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| T |
35145687 |
tttacagtatgaaaatattttcacatttaattttcttaaactactagtcattttaaatttctagcaagga |
35145756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 29026437 - 29026585
Alignment:
| Q |
50 |
tattttcacatttcattttcttaaacttccagtccttttaaagttctaacaaggagatggaagacttgcatggtaacatttgtggtagaggataatacga |
149 |
Q |
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||||||||| ||||||||||||||||| | | || ||||||| | |||||||||| || |||||||||||| |||| ||||| |||| || ||||| | |
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| T |
29026437 |
tattttcacttttcattttcttaaactgctattcgttttaaattgctaacaaggacattgaagacttgcataacaacaattgtgataga-gagaatacaa |
29026535 |
T |
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| Q |
150 |
aaactgaagaaaatgcatttttagaaacaataaaaataatgtttggacattt |
201 |
Q |
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|||||| |||||| ||||||||||| | || ||||| ||||||||||||| |
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| T |
29026536 |
aaactg--gaaaatacatttttagaatctgtagaaatattgtttggacattt |
29026585 |
T |
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