View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_16 (Length: 411)
Name: NF2498_low_16
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 20612161 - 20612555
Alignment:
| Q |
1 |
gacaatccctattttatttatgggaaaagctaagaagtacatttggggcacttgttaaaaagcttaaaaaagaaagtttatcttggacaaggattatgat |
100 |
Q |
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| T |
20612161 |
gacaacccctattttatttatgggaaacgctaagaagcacatttggggcacttgttaaaaagcttaaaaaagaaagtttatcttggagaaggattatgat |
20612260 |
T |
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| Q |
101 |
aatttgaaattctgttaagaggtaaggaaagtcggacaaagaaattatttcacctttgtaatttggagttccggtggcaacaacccttatttgagtacac |
200 |
Q |
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| T |
20612261 |
aatttaaaattctattaagaggtaagtaaagtcgaacaagaaaattatttcacccttgtaatttgtagctctggtggcaacaacccttatttgaatacac |
20612360 |
T |
|
| Q |
201 |
ttggggtccgtccctgagtcctttgattagattgaggaaggtggaaacaactcgataaattgaaccgaagaaattcaatatactatcaaaatttnnnnnn |
300 |
Q |
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| T |
20612361 |
tt-gggtccgtccctgagtcctttgattagattgaggaaggtggaaacaactcgataaattgaaccgaagaaattcaatatactatcaaaatttaaaaaa |
20612459 |
T |
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| Q |
301 |
nnnnnnntgagtacattgtatgaaatgaattagatgttagagataaatattattgcagattcaaaatttaaagagtgatgagaaattagttcaaac |
396 |
Q |
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| T |
20612460 |
ataaaaatgaatacattgtctgaaatgaattagatgttagagataaatattgttgcagattcaaaatttaaagagtgatgagaaattagttcaaac |
20612555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 24093780 - 24093820
Alignment:
| Q |
46 |
gggcacttgttaaaaagcttaaaaaagaaagtttatcttgg |
86 |
Q |
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| T |
24093780 |
gggcacttgttaagaagcttaaaagagaaagtttatcttgg |
24093820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 9596291 - 9596329
Alignment:
| Q |
46 |
gggcacttgttaaaaagcttaaaaaagaaagtttatctt |
84 |
Q |
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| T |
9596291 |
gggcacttgttaagaagcttaaaaaagaaagtttatctt |
9596329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 39286898 - 39286858
Alignment:
| Q |
46 |
gggcacttgttaaaaagcttaaaaaagaaagtttatcttgg |
86 |
Q |
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| T |
39286898 |
gggcacttgttaagaagcttaaaagagaatgtttatcttgg |
39286858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 16650797 - 16650829
Alignment:
| Q |
49 |
cacttgttaaaaagcttaaaaaagaaagtttat |
81 |
Q |
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| T |
16650797 |
cacttgttaaaaagcttaaaaaagaaagtttat |
16650829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 13375057 - 13375023
Alignment:
| Q |
312 |
tacattgtatgaaatgaattagatgttagagataa |
346 |
Q |
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| T |
13375057 |
tacattgtatgaaatgatttagatgttagagataa |
13375023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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