View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_17 (Length: 393)
Name: NF2498_low_17
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_17 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 20524732 - 20524497
Alignment:
| Q |
1 |
ttttttgtctcaaatcattgaatgaaaattgttagaagatttctacactcattttacattaataagcaggtaatgcacgtctcaaatcagacctttcctc |
100 |
Q |
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| T |
20524732 |
ttttttgtctcaaatcattgaatgagaattgctagaagatttctacactcattttacattaaaaagcaggtaatgcacgtctcaaatcagacctttcctc |
20524633 |
T |
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| Q |
101 |
tggatcatccacatggactatcttgcatagatgtcctccctaggtttctcttttgttgcttgatgannnnnnnnncttcgaggttattgcttgatgatga |
200 |
Q |
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| T |
20524632 |
tggatcatccatatggattatcttgcatagatgtcctccctaggtttctcttttgttgcttgatgatttttttttcttcgaggttattgcttgatgatga |
20524533 |
T |
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| Q |
201 |
tgttgttggttgtgcttttccattatattagcaaag |
236 |
Q |
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| T |
20524532 |
tgttgttggttgtgcttttccattatattagcaaag |
20524497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 20524426 - 20524352
Alignment:
| Q |
306 |
ttacctctaattaatattatgtacgctactctcaaaatattattttctaccttctatttataataatgaaaaata |
380 |
Q |
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| T |
20524426 |
ttacctctaattaatattatgtacgctactctcaaaatattatattctaccttctatttataataatgaaaaata |
20524352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 33907 - 33980
Alignment:
| Q |
4 |
tttgtctcaaatcattgaatgaaaattgttagaagatttctacactcattttacattaataagcaggtaatgca |
77 |
Q |
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|||||||||||||||||||| | ||||||| ||| ||||||||| ||||| || | || || ||||||||||| |
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| T |
33907 |
tttgtctcaaatcattgaataatgattgttaaaaggtttctacacacatttgacgtcaagaaacaggtaatgca |
33980 |
T |
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