View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_2 (Length: 714)
Name: NF2498_low_2
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 582; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 33 - 688
Target Start/End: Complemental strand, 7340822 - 7340167
Alignment:
| Q |
33 |
aaactcattctgaaatagtaaaatttcaattccttcttccatcaaattaaaatccgaattgcatattattccaattgagctgcgctgcgactatacgagt |
132 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
7340822 |
aaactcattctgaaatagtcaaatttcaattccttcttccatcaaattaaaatccgaattgcatattattccgactgagctgcgctgcgactatacgagt |
7340723 |
T |
|
| Q |
133 |
tgtcaaa-tgcaggacttttgtgaattgtgatggccttttctccttgctttcaatggctgatctgcatttccttttggttttaactgcaatgtaatggat |
231 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7340722 |
tgtcaaaatgcaggacttttgtgaattgtgatggccttttctccttgctttcaatggctgatctgcatttccttttggttttaactgcaatgtaatggat |
7340623 |
T |
|
| Q |
232 |
ttgtgcatcaaactattaatcttacttgctgatcatagatgtcaactcttgtaactcataggccaatgttctaagattagataactttatgataattaac |
331 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7340622 |
ttgtgcatcaaactattaatcttacttgttggtcatagatgtcaactcttgtaactcataggccaatgtcctaagattagataactttatgataattaac |
7340523 |
T |
|
| Q |
332 |
aaaatattcatcagatatcagcatcataattcataatagtgatatgaagtgaattgaagacttagactacaacaggttcacaattacaaacagattttca |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7340522 |
aaaatattcatcagatatcagcatcataattcataatagtgatatgaagtgaattgaagactgagactacaacaggttcacaattacaaacagattttca |
7340423 |
T |
|
| Q |
432 |
tttttaaaactaaaggggtgacaaggagnnnnnnnnnnttgaattttcacaaaggaatcttagaaacttggtaattacagtgtctttgctggaaatagta |
531 |
Q |
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| T |
7340422 |
tttttaaaactaaaggggtgacaaggag-aaaaaaaaattgaattttcacaaaggaatcttagaaacttggtaattacagtgtctttgctggaaatagta |
7340324 |
T |
|
| Q |
532 |
tggataggagatcgtgaagtctgtatgtccatatataagttgtggaaaatatatttactaatgggagtagtaatcacacctcttgagattgcactggtat |
631 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7340323 |
tggataggagatcgtgaagtctgtatgtccatatataagttgtggaaaatatatttactaatgggagtagtaatcacacctcttgagattgcactggtat |
7340224 |
T |
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| Q |
632 |
taaaatacaggcattatttgctgaaatttggtgaaaattctatttatgctggttaag |
688 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7340223 |
taaaatacaggcattatttgctgaaatttggtgaaaattctgtttatgctggttaag |
7340167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 33 - 210
Target Start/End: Original strand, 44413202 - 44413380
Alignment:
| Q |
33 |
aaactcattctgaaatagtaaaatttcaattccttcttccatcaaattaaaatccgaattgcatattattccaattgagctgcgctgcgactatacgagt |
132 |
Q |
| |
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|||||| | ||||||| || |||||| |||||||| |||||||||||||||||||||| ||| || || | ||||| |||| ||| |||| | ||| |
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| T |
44413202 |
aaactcttcctgaaattgtcaaatttaaattccttgttccatcaaattaaaatccgaaccgcaagttttttcgattgaactgcattgctactacatcagt |
44413301 |
T |
|
| Q |
133 |
tgtcaaatgcaggacttttgtgaattgtgatggccttttctcc-ttgctttcaatggctgatctgcatttccttttggt |
210 |
Q |
| |
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||||||| ||||||| ||||| ||| |||||||||||||||| | | || |||||||||| | ||||||||||||||| |
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| T |
44413302 |
tgtcaaaagcaggacatttgttaatcatgatggccttttctccatcgtttccaatggctgagccgcatttccttttggt |
44413380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7340875 - 7340844
Alignment:
| Q |
1 |
ttgttgattggaagggtttagggatcaaatta |
32 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7340875 |
ttgttgattggaagggtttagggatcaaatta |
7340844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 211 - 365
Target Start/End: Complemental strand, 23083969 - 23083815
Alignment:
| Q |
211 |
tttaactgcaatgtaatggatttgtgcatcaaactattaatcttacttgctgatcatagatgtcaactcttgtaactcataggccaatgttctaagatta |
310 |
Q |
| |
|
||||||| ||| ||| ||||||||||||||| || ||| ||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
23083969 |
tttaactacaaggtactggatttgtgcatcagacaattgatcttactttttggtcatatatgtcaactcttgtaactcataggccaatgtttcaagatta |
23083870 |
T |
|
| Q |
311 |
gataactttatgataattaacaaaatattcatcagatatcagcatcataattcat |
365 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||| ||||| |||||||| |
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| T |
23083869 |
aataacttgctgataattgacaaaatattcatcagatatcggcatcttaattcat |
23083815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 23084042 - 23083968
Alignment:
| Q |
33 |
aaactcattctgaaatagtaaaatttcaattccttcttccatcaaattaaaatccgaattgcatattattccaatt |
108 |
Q |
| |
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|||||| || ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||| |
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| T |
23084042 |
aaactctttttgaaatagtcaaatttcaattccttcttccatcaaatt-aaatctgaattgcatataatttcaatt |
23083968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 354 - 459
Target Start/End: Complemental strand, 1548199 - 1548094
Alignment:
| Q |
354 |
atcataattcataatagtgatatgaagtgaattgaagacttagactacaacaggttcacaattacaaacagattttcatttttaaaactaaaggggtgac |
453 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||| | || ||| ||||||||||| ||||||||| ||||||||||||||||| ||||| ||| |
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| T |
1548199 |
atcataaatcataatagtgatatgaagtgaattgtagattaaggttacgacaggttcacatttacaaacatcttttcatttttaaaacttaagggttgag |
1548100 |
T |
|
| Q |
454 |
aaggag |
459 |
Q |
| |
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|||||| |
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| T |
1548099 |
aaggag |
1548094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 536 - 649
Target Start/End: Complemental strand, 1548053 - 1547948
Alignment:
| Q |
536 |
taggagatcgtgaagtctgtatgtccatatataagttgtggaaaatatatttactaatgggagtagtaatcacacctcttgagattgcactggtattaaa |
635 |
Q |
| |
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||||||||| |||||| | ||||||||||||||||||||| |||| || |||||||| ||||| ||| |||| | ||||||||||||||||| |
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| T |
1548053 |
taggagatcatgaagtttatatgtccatatataagttgtgaaaaacatgtttactaaagggagaagtggtcac--------aaattgcactggtattaaa |
1547962 |
T |
|
| Q |
636 |
atacaggcattatt |
649 |
Q |
| |
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||||| |||||||| |
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| T |
1547961 |
atacaagcattatt |
1547948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 28910559 - 28910617
Alignment:
| Q |
307 |
attagataactttatgataattaacaaaatattcatcagatatcagcatcataattcat |
365 |
Q |
| |
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|||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
28910559 |
attagataacgtgctgataattaacaaaatattcatcgaatatcagcttcataattcat |
28910617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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