View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2498_low_20 (Length: 383)

Name: NF2498_low_20
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2498_low_20
NF2498_low_20
[»] chr1 (7 HSPs)
chr1 (49-365)||(50663654-50663984)
chr1 (183-220)||(29095613-29095650)
chr1 (185-220)||(42480194-42480229)
chr1 (186-220)||(24135827-24135861)
chr1 (183-220)||(1270242-1270279)
chr1 (183-220)||(2958782-2958819)
chr1 (183-220)||(31032788-31032825)
[»] chr7 (3 HSPs)
chr7 (183-220)||(23992041-23992078)
chr7 (183-220)||(42195448-42195485)
chr7 (183-220)||(25686436-25686473)
[»] chr4 (5 HSPs)
chr4 (183-220)||(23348207-23348244)
chr4 (183-220)||(26179301-26179338)
chr4 (183-218)||(18375483-18375518)
chr4 (183-220)||(37674091-37674128)
chr4 (191-220)||(41633296-41633325)
[»] chr3 (6 HSPs)
chr3 (183-220)||(521855-521892)
chr3 (183-220)||(1561346-1561383)
chr3 (183-220)||(31788376-31788413)
chr3 (183-220)||(38176480-38176517)
chr3 (183-220)||(45166297-45166334)
chr3 (183-220)||(50612965-50613002)
[»] chr8 (1 HSPs)
chr8 (185-220)||(15562005-15562040)
[»] chr5 (5 HSPs)
chr5 (183-218)||(228094-228129)
chr5 (183-220)||(3456823-3456860)
chr5 (191-220)||(11739310-11739339)
chr5 (183-220)||(29223534-29223571)
chr5 (192-220)||(41326539-41326567)
[»] chr2 (6 HSPs)
chr2 (183-220)||(3810360-3810397)
chr2 (191-220)||(13686072-13686101)
chr2 (183-220)||(35323566-35323603)
chr2 (183-220)||(35676368-35676405)
chr2 (183-219)||(25414984-25415020)
chr2 (192-220)||(42263911-42263939)
[»] scaffold0002 (1 HSPs)
scaffold0002 (192-220)||(492746-492774)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 49 - 365
Target Start/End: Original strand, 50663654 - 50663984
Alignment:
Q  49 atttaggtg-aaaaaattcctttgatgtatatactgtgctaaaaaactagtgactgttcacagttgactttatgaagagtaatgctatatctctnnnnnn 147  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          
T  50663654 atttaggtgcaaaaaattcctttcatgtatatactgtgctaaaaaactagtgactgttcacagttgactttatgaagagcaatgctatatctctaaaaaa 50663753  T
Q  148 nnnnntaacatcaagaattttacaagaataaagag----------------actatttaccacaattcaaggaggtgtggctgaaaaattcttgattcta 231  Q
         ||||||||| ||||||||||||||||||||                | |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  50663754 aa---taacatcaaaaattttacaagaataaagagcagtgaatgataatgcattatttaccacaattcaaggacgtgtgactgaaaaattcttgattcta 50663850  T
Q  232 tttgattgatgatttcattgaataaaaaattaatagagatgtaaaacaccaatagagtgtggatcaaagtgagacaattgaaaacataaactaagtcagt 331  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  50663851 tatgattgatgatttcattgaataaaaaattaatagagatgtaaaacatcaatagagtgtggatcaaagtgaaacaattgaaaacataaactaagtcagt 50663950  T
Q  332 gatctattaactattatattaaggatcaaaagag 365  Q
    ||||||||||||||||||||||||||||||||||    
T  50663951 gatctattaactattatattaaggatcaaaagag 50663984  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 29095650 - 29095613
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  29095650 actatttgccacaattcaaggaggtgtggctgaaaaat 29095613  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 42480194 - 42480229
Alignment:
Q  185 tatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||||||||||||| ||||||||||||||||||    
T  42480194 tatttaccacaattcaatgaggtgtggctgaaaaat 42480229  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 24135827 - 24135861
Alignment:
Q  186 atttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    |||| ||||||||||||||||||||||||||||||    
T  24135827 atttgccacaattcaaggaggtgtggctgaaaaat 24135861  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 1270242 - 1270279
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  1270242 actatttgccacaattcaagaaggtgtggctgaaaaat 1270279  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 2958819 - 2958782
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  2958819 actatttgccaaaattcaaggaggtgtggctgaaaaat 2958782  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 31032825 - 31032788
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  31032825 actatttgccacagttcaaggaggtgtggctgaaaaat 31032788  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 23992078 - 23992041
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  23992078 actatttgccacaattcaaggaggtgtggctgaaaaat 23992041  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 42195448 - 42195485
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    |||||||||||||||||||||||||||| |||||||||    
T  42195448 actatttaccacaattcaaggaggtgtgtctgaaaaat 42195485  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 25686436 - 25686473
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  25686436 actatttaccacaatttaaggaggtgtggctggaaaat 25686473  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 23348244 - 23348207
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  23348244 actatttaccataattcaaggaggtgtggctgaaaaat 23348207  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 26179338 - 26179301
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    |||||||| |||||||||||||||||||||||||||||    
T  26179338 actatttaacacaattcaaggaggtgtggctgaaaaat 26179301  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 18375518 - 18375483
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaa 218  Q
    ||||||| ||||||||||||||||||||||||||||    
T  18375518 actatttgccacaattcaaggaggtgtggctgaaaa 18375483  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 37674128 - 37674091
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  37674128 actatttactacaattcaaagaggtgtggctgaaaaat 37674091  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 41633296 - 41633325
Alignment:
Q  191 ccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||||||||||||||||||||||||||    
T  41633296 ccacaattcaaggaggtgtggctgaaaaat 41633325  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 521892 - 521855
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  521892 actatttgccacaattcaaggaggtgtggctgaaaaat 521855  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 1561383 - 1561346
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  1561383 actatttgccacaattcaaggaggtgtggctgaaaaat 1561346  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 31788376 - 31788413
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  31788376 actatttaccacaattcaaggaggtgtgattgaaaaat 31788413  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 38176517 - 38176480
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| || |||||||||||||||||||||||||||    
T  38176517 actatttgcctcaattcaaggaggtgtggctgaaaaat 38176480  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 45166297 - 45166334
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  45166297 actatttgccacaattcaaggaggcgtggctgaaaaat 45166334  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 50613002 - 50612965
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  50613002 actatttgccacaattcaaggaggtgtgactgaaaaat 50612965  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 15562040 - 15562005
Alignment:
Q  185 tatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||| ||||||||||||||||||||||||||||||    
T  15562040 tatttgccacaattcaaggaggtgtggctgaaaaat 15562005  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 228094 - 228129
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaa 218  Q
    |||||||||||||||||||||||||||| |||||||    
T  228094 actatttaccacaattcaaggaggtgtgactgaaaa 228129  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 3456823 - 3456860
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  3456823 actatttgccacaattcaaggaggtgtgactgaaaaat 3456860  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 220
Target Start/End: Complemental strand, 11739339 - 11739310
Alignment:
Q  191 ccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||||||||||||||||||||||||||    
T  11739339 ccacaattcaaggaggtgtggctgaaaaat 11739310  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 29223534 - 29223571
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  29223534 actatttgccacaattcaaggaggtgtgactgaaaaat 29223571  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 41326567 - 41326539
Alignment:
Q  192 cacaattcaaggaggtgtggctgaaaaat 220  Q
    |||||||||||||||||||||||||||||    
T  41326567 cacaattcaaggaggtgtggctgaaaaat 41326539  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 3810397 - 3810360
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  3810397 actatttgccacaattcaaggaggtgtgactgaaaaat 3810360  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 13686072 - 13686101
Alignment:
Q  191 ccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||||||||||||||||||||||||||    
T  13686072 ccacaattcaaggaggtgtggctgaaaaat 13686101  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 35323603 - 35323566
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  35323603 actatttgccacaattcaatgaggtgtggctgaaaaat 35323566  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 35676405 - 35676368
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaat 220  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  35676405 actatttgccacaattcaaggaggtgtgactgaaaaat 35676368  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 25414984 - 25415020
Alignment:
Q  183 actatttaccacaattcaaggaggtgtggctgaaaaa 219  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  25414984 actatttgccacaattcaaggaggtatggctgaaaaa 25415020  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 42263911 - 42263939
Alignment:
Q  192 cacaattcaaggaggtgtggctgaaaaat 220  Q
    |||||||||||||||||||||||||||||    
T  42263911 cacaattcaaggaggtgtggctgaaaaat 42263939  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 492746 - 492774
Alignment:
Q  192 cacaattcaaggaggtgtggctgaaaaat 220  Q
    |||||||||||||||||||||||||||||    
T  492746 cacaattcaaggaggtgtggctgaaaaat 492774  T

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