View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_22 (Length: 366)
Name: NF2498_low_22
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 32567110 - 32566756
Alignment:
| Q |
1 |
taactccttcaaactgatatgaacaatctgtgaagtaatggtttggactttggatttcgtagttgtaggttcnnnnnnnncttctttcctcagtgatcat |
100 |
Q |
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| T |
32567110 |
taactccttcaaactgatatgaacaatctgtgaagtaatggtttggactttggatttcgtagttgtaggttcttttttttcttctttcctcagtgatcat |
32567011 |
T |
|
| Q |
101 |
gatgtagaatatggtggtgaaagtctcaagtgtatatggacttaaaacagctatttgcttcaccccaaaattcatgaataacttgtaatatatcagcacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32567010 |
gatgtagaatatggtggtgaaagtctcaagtgtatatggacttaaaacagctatttgcttcaccccaaaattcatgaataacttgtaatatatcagcacc |
32566911 |
T |
|
| Q |
201 |
gtttgtgaaaattctgttgtcacaaagggcaaagaagatgttccctttcagaacctacaattcataattttctaaggtgttgctttcaagcagcaccatt |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32566910 |
gtttgtgaaaatcctgttgtcacaaagggcaaagaagatgttccctttcagaacctacaattcataattttctaaggtgttgctttcaagcagcaccatt |
32566811 |
T |
|
| Q |
301 |
ggtttctttttccatggttacctgtttcagggcttgtgttttctatgaaattcat |
355 |
Q |
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| T |
32566810 |
ggtttctttgtccatggttacctgtttcagtgcttgtgttttctatgaaattcat |
32566756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 1756901 - 1756937
Alignment:
| Q |
285 |
ttcaagcagcaccattggtttctttttccatggttac |
321 |
Q |
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| T |
1756901 |
ttcaagcagcaccattggtttctttatccatggttac |
1756937 |
T |
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