View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_25 (Length: 347)
Name: NF2498_low_25
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 32570616 - 32570738
Alignment:
| Q |
118 |
ttttgaaggtaaagaatctatgtcatgaaaatgtaaaacttacccagaaacaagtcgaaggttgtcttcataacgttgtctttgtctccccgttcttgct |
217 |
Q |
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| T |
32570616 |
ttttgaagataaagaatctatgtcatgaaaatgtaaaacttacccagaaacaagtcgaaggttgtcttcataacgttgtctttgtctccccgttcttgct |
32570715 |
T |
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| Q |
218 |
ggcacaaacgacatagattctag |
240 |
Q |
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| T |
32570716 |
ggcacaaacgacatagattctag |
32570738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32570503 - 32570568
Alignment:
| Q |
1 |
tggaaacccatcaacaacacaaaacaattcaatcatatcaataagcacaataatgcatggtcataa |
66 |
Q |
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| T |
32570503 |
tggaaacccatcaacaacacaaaacaattcaatcatatcaataagcacaataatgcatggtcataa |
32570568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 332
Target Start/End: Original strand, 32570795 - 32570830
Alignment:
| Q |
297 |
tcaggaacagggtttgttataaaagttaaaacaaaa |
332 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
32570795 |
tcaggaacagggtttgttataaaagttaaaagaaaa |
32570830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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