View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2498_low_27 (Length: 336)

Name: NF2498_low_27
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2498_low_27
NF2498_low_27
[»] chr1 (5 HSPs)
chr1 (4-326)||(8236808-8237130)
chr1 (268-325)||(3363077-3363134)
chr1 (259-325)||(17739419-17739485)
chr1 (278-325)||(26290228-26290275)
chr1 (277-325)||(15421687-15421735)
[»] chr4 (4 HSPs)
chr4 (256-324)||(26492787-26492855)
chr4 (266-325)||(24493532-24493591)
chr4 (107-156)||(17295065-17295114)
chr4 (140-185)||(17465566-17465611)
[»] chr7 (5 HSPs)
chr7 (262-326)||(6531780-6531844)
chr7 (273-325)||(35103591-35103644)
chr7 (237-307)||(1751511-1751581)
chr7 (266-325)||(10013692-10013751)
chr7 (109-172)||(6531935-6531995)
[»] chr5 (2 HSPs)
chr5 (241-325)||(4237218-4237301)
chr5 (241-325)||(20685539-20685622)
[»] chr6 (5 HSPs)
chr6 (220-326)||(1423646-1423750)
chr6 (110-172)||(6235108-6235170)
chr6 (266-324)||(32796018-32796076)
chr6 (266-319)||(23639356-23639409)
chr6 (277-325)||(34108502-34108550)
[»] chr2 (4 HSPs)
chr2 (117-184)||(21515709-21515776)
chr2 (121-185)||(21511299-21511363)
chr2 (266-325)||(29952145-29952204)
chr2 (266-325)||(36129612-36129671)
[»] chr3 (1 HSPs)
chr3 (277-325)||(17576720-17576768)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 8237130 - 8236808
Alignment:
Q  4 ttctagcccttatatactcttcgtgcctccctctaagacacatccctacgccataacatcctttgtttcttgaaatttgccacgtaaatatttcatttta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  8237130 ttctagcccttatatactcttcgtgcctccctctaagacacatccctacgccataacatcctttgttccttgaaaattgccacgtaaatatttcatttta 8237031  T
Q  104 cctcttgacacggatccgcaagcgtatggtttttaccgagtagtaaaaatattatcgtccacaaagagtcaaagtaattaccaatcnnnnnnncaatgat 203  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||       |||||||    
T  8237030 cctcttgacacggatccgcaagcgtatggtttttatcgagtagtaaaaatattatcgttcacagagagtcaaagtaattaccaatctttttttcaatgat 8236931  T
Q  204 gattagtagaaaagactagagtttagaatttcgatagtttcttggtttaaagttcagattataaaagcgtctagggattattggttcgtcgtaataacaa 303  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8236930 gattagcagaaaagactagagtttagaatttcgatagtttcttggtttaaagttcagattataaaagcgtctagggattattggctcgtcgtaataacaa 8236831  T
Q  304 atcactaacaatccaagcctatg 326  Q
    |||||||||||||||||||||||    
T  8236830 atcactaacaatccaagcctatg 8236808  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 3363077 - 3363134
Alignment:
Q  268 aagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaagcctat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3363077 aagcgtctagggattattggttcgtcgtaataacaaatcactaacaatcgaagcctat 3363134  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 17739485 - 17739419
Alignment:
Q  259 agattataaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaagcctat 325  Q
    ||||||||||||| |||||||||  ||||||||||||||| |||||||||||||| ||||| |||||    
T  17739485 agattataaaagcatctagggatcgttggttcgtcgtaatgacaaatcactaacattccaaacctat 17739419  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 26290228 - 26290275
Alignment:
Q  278 ggattattggttcgtcgtaataacaaatcactaacaatccaagcctat 325  Q
    |||||||||||||||| |||||||||| ||| |||||| |||||||||    
T  26290228 ggattattggttcgtcttaataacaaaccacaaacaattcaagcctat 26290275  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 15421735 - 15421687
Alignment:
Q  277 gggattattggttcgtcgtaataacaaatcactaacaatccaagcctat 325  Q
    |||||||||||||| || |||| |||||||||| ||||||||| |||||    
T  15421735 gggattattggttcatcataatgacaaatcacttacaatccaaacctat 15421687  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 26492787 - 26492855
Alignment:
Q  256 ttcagattataaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaagccta 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26492787 ttcagattataaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatcaaagccta 26492855  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 24493591 - 24493532
Alignment:
Q  266 aaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaagcctat 325  Q
    |||| ||||| |||||||||||||| ||||||| |||||| ||| ||||||||| |||||    
T  24493591 aaaaacgtcttgggattattggttcatcgtaatgacaaattactcacaatccaaacctat 24493532  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 17295065 - 17295114
Alignment:
Q  107 cttgacacggatccgcaagcgtatggtttttaccgagtagtaaaaatatt 156  Q
    ||||||||  ||||||||||||| |||| ||| |||||||||||||||||    
T  17295065 cttgacacaaatccgcaagcgtacggttcttatcgagtagtaaaaatatt 17295114  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 17465611 - 17465566
Alignment:
Q  140 cgagtagtaaaaatattatcgtccacaaagagtcaaagtaattacc 185  Q
    ||||||||||||| |||||||| |||| ||||| ||||||||||||    
T  17465611 cgagtagtaaaaagattatcgttcacagagagttaaagtaattacc 17465566  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 6531844 - 6531780
Alignment:
Q  262 ttataaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaagcctatg 326  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  6531844 ttataaaagcgtctagggattattggtttgtcataataacaaatcactaacaatccaagcctatg 6531780  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 35103591 - 35103644
Alignment:
Q  273 tctagggattattggttcgtcgtaat-aacaaatcactaacaatccaagcctat 325  Q
    ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||    
T  35103591 tctagggattattggttcgtcttaataaacaaatcactaacaattcaagcctat 35103644  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 1751581 - 1751511
Alignment:
Q  237 atagtttcttggtttaaagttcagattataaaa-gcgtctagggattattggttcgtcgtaataacaaatca 307  Q
    |||||||||||||| ||| |||||||||||||| |||| | ||||||||||||| ||| |||||||||||||    
T  1751581 atagtttcttggttaaaa-ttcagattataaaaagcgtatggggattattggtttgtcttaataacaaatca 1751511  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 10013692 - 10013751
Alignment:
Q  266 aaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaagcctat 325  Q
    ||||| |||| |||||||||||||||||||||| |||||| ||| |||| |||| |||||    
T  10013692 aaaagtgtcttgggattattggttcgtcgtaatgacaaattactcacaacccaaacctat 10013751  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 6531995 - 6531935
Alignment:
Q  109 tgacacggatccgcaagcgtatggtttttaccgagtagtaaaaatattatcgtccacaaagagt 172  Q
    ||||||| ||||||||||||| |||| ||| |||||||||||||   |||||||||||| ||||    
T  6531995 tgacacgaatccgcaagcgtacggttcttatcgagtagtaaaaa---tatcgtccacaaggagt 6531935  T

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Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 4237301 - 4237218
Alignment:
Q  241 tttcttggtttaaagttcagattataaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaagcctat 325  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||    
T  4237301 tttcttggttaaaa-ttcagattataaaagcgtctagggattattggttcgtcttaagaacaaatcacaaacaattcaagcctat 4237218  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 20685622 - 20685539
Alignment:
Q  241 tttcttggtttaaagttcagattataaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaagcctat 325  Q
    |||||||||| ||| |||| ||||||||||||| |||||||||||||||| || || |||||||||||||||||| |||||||||    
T  20685622 tttcttggttaaaa-ttcatattataaaagcgtatagggattattggttcatcttattaacaaatcactaacaattcaagcctat 20685539  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 1423646 - 1423750
Alignment:
Q  220 tagagtttagaatttcgatagtttcttggtttaaagttcagattataaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaa 319  Q
    |||||||||||| ||| | || || |||||||||| || | |||||||||| |||||||||| |||||||||||||||| |||||| |||||||||||||    
T  1423646 tagagtttagaagttcaacagatt-ttggtttaaattt-atattataaaagagtctagggataattggttcgtcgtaatgacaaattactaacaatccaa 1423743  T
Q  320 gcctatg 326  Q
    |||||||    
T  1423744 gcctatg 1423750  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 6235170 - 6235108
Alignment:
Q  110 gacacggatccgcaagcgtatggtttttaccgagtagtaaaaatattatcgtccacaaagagt 172  Q
    |||||| ||||||||||||| |||| ||| ||||||||||||   ||||||||||||||||||    
T  6235170 gacacgaatccgcaagcgtacggttcttatcgagtagtaaaacatttatcgtccacaaagagt 6235108  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 32796018 - 32796076
Alignment:
Q  266 aaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaagccta 324  Q
    |||||||||| ||||||||||||||||| |||| |||||||  | ||||||||| ||||    
T  32796018 aaaagcgtctcgggattattggttcgtcataatgacaaatctttcacaatccaacccta 32796076  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 23639356 - 23639409
Alignment:
Q  266 aaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaa 319  Q
    |||||||| | |||||||||||||| || |||| |||||||||| |||||||||    
T  23639356 aaaagcgtatcgggattattggttcatcataatgacaaatcactcacaatccaa 23639409  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 34108502 - 34108550
Alignment:
Q  277 gggattattggttcgtcgtaataacaaatcactaacaatccaagcctat 325  Q
    |||||||||||||| || |||| |||||||||| ||||||||| |||||    
T  34108502 gggattattggttcatcataatgacaaatcacttacaatccaaacctat 34108550  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 21515709 - 21515776
Alignment:
Q  117 atccgcaagcgtatggtttttaccgagtagtaaaaatattatcgtccacaaagagtcaaagtaattac 184  Q
    ||||||||||||| |||| ||| |||||||||||||||| |||||||| | ||||| |||||||||||    
T  21515709 atccgcaagcgtacggttcttatcgagtagtaaaaatatcatcgtccatagagagttaaagtaattac 21515776  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 21511299 - 21511363
Alignment:
Q  121 gcaagcgtatggtttttaccgagtagtaaaaatattatcgtccacaaagagtcaaagtaattacc 185  Q
    ||||||||| || | ||| ||||||||||||| ||||||||||||| ||||| ||||||||||||    
T  21511299 gcaagcgtacgggtcttatcgagtagtaaaaagattatcgtccacatagagttaaagtaattacc 21511363  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 29952204 - 29952145
Alignment:
Q  266 aaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaagcctat 325  Q
    |||||||||| |||||||||||||| || |||| |||||||||| ||||||||| |||||    
T  29952204 aaaagcgtctcgggattattggttcatcataatgacaaatcactcacaatccaaacctat 29952145  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 36129612 - 36129671
Alignment:
Q  266 aaaagcgtctagggattattggttcgtcgtaataacaaatcactaacaatccaagcctat 325  Q
    |||||||||| | ||||||||||||||| |||| |||||||||| ||||||||| |||||    
T  36129612 aaaagcgtctcgcgattattggttcgtcataatgacaaatcactcacaatccaaacctat 36129671  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 17576720 - 17576768
Alignment:
Q  277 gggattattggttcgtcgtaataacaaatcactaacaatccaagcctat 325  Q
    |||||||||||||| || |||| |||||||||| ||||||||| |||||    
T  17576720 gggattattggttcatcataatgacaaatcacttacaatccaaacctat 17576768  T

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