View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_28 (Length: 332)
Name: NF2498_low_28
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_28 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 50750109 - 50750410
Alignment:
| Q |
21 |
cactgcttacatttttgtagttatagttaaagccatgcactgagcatctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatcagagg |
120 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50750109 |
cactgcttccatttttgtagttatagttaaagccatgcactgagcatctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatcagagg |
50750208 |
T |
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| Q |
121 |
actgaccattaccttgtttctgcctctcttcttcacttattgccttactatacactgaaggatgtccatctcttctaaaagcagtcattgttgtaatatc |
220 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50750209 |
actgaccattaccttgtttctgcctctctttttcacttattgccttactatacactgaaggatgtccatctcttctaaaagcagtcattgttgtaatatc |
50750308 |
T |
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| Q |
221 |
ttgtagatatactggaaatctcattctcttcagcactccttttagcactaccagtggtcctggaacatgtaagtggctgaaatattttacaggttgcctt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50750309 |
ttgtagatatactggaaatctcattctcttcagcactccttttagcactaccagtggtcctggaacatgtaagtggctgaaatattttacaggttgcctt |
50750408 |
T |
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| Q |
321 |
tg |
322 |
Q |
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|| |
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| T |
50750409 |
tg |
50750410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 65 - 261
Target Start/End: Original strand, 19411830 - 19412020
Alignment:
| Q |
65 |
catctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatcagaggactgaccattaccttgtttctgcctctcttcttcacttattgcc |
164 |
Q |
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| T |
19411830 |
catctcattccaaatatcaggcacaccagggaggcaccaatgactgcaatcagaggaatggcccattctttgtttct------catcttggctggttgcc |
19411923 |
T |
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| Q |
165 |
ttactatacactgaaggatgtccatctcttctaaaagcagtcattgttgtaatatcttgtagatatactggaaatctcattctcttcagcactcctt |
261 |
Q |
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| T |
19411924 |
ttcctatacactgaaggatgtccatctctgcgtaaggcagtcattgtcgtaatatcttgcaggtataccggaaacctcattttcttcagcactcctt |
19412020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 4075257 - 4075304
Alignment:
| Q |
68 |
ctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatc |
115 |
Q |
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| T |
4075257 |
ctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatc |
4075304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 4423 - 4469
Alignment:
| Q |
66 |
atctcattccaaatatcaggcacaccagggaggcaccaatggctgca |
112 |
Q |
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| T |
4423 |
atctcattccatgtatcaggaacgccagggaggcaccaatggctgca |
4469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 39085650 - 39085604
Alignment:
| Q |
69 |
tcattccaaatatcaggcacaccagggaggcaccaatggctgcaatc |
115 |
Q |
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| T |
39085650 |
tcattccacatatcaggcactccaggtagacaccaatggctgcaatc |
39085604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 15113399 - 15113354
Alignment:
| Q |
71 |
attccaaatatcaggcacaccagggaggcaccaatggctgcaatca |
116 |
Q |
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| T |
15113399 |
attccaagtatcaggaacaccaggcagacaccaatggctgcaatca |
15113354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 18358875 - 18358919
Alignment:
| Q |
71 |
attccaaatatcaggcacaccagggaggcaccaatggctgcaatc |
115 |
Q |
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| T |
18358875 |
attccaagtatcaggaacaccagctaggcaccaatggctgcaatc |
18358919 |
T |
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