View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_30 (Length: 324)
Name: NF2498_low_30
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 50663305 - 50663599
Alignment:
| Q |
17 |
gaagggaagaaaacaactatgtaaatcaaaggaagtttaaagaatcaaggttataca--atgacttaaaattggccaatcatcataatgacattatttat |
114 |
Q |
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| T |
50663305 |
gaagggaagaaaacaactatgtaaatcaaaggaagtttaaagaatcaaggttatacacaatgacttaaaattggccaatcatcataatgacattatttat |
50663404 |
T |
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| Q |
115 |
ttcaaacatacactgtatactagaacaatgacataataaggatgaacattaacttttgtgcaatcaacttatacagaattgtaaaagtttctcaacctac |
214 |
Q |
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| T |
50663405 |
ttcaaacatacactgtatactagaacaatgacataataaggataaacattaacttttgtgcaatcaacttatacagaattgtaaaagtttctcaacctac |
50663504 |
T |
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| Q |
215 |
caccttcgagtgtttgtttagggagatcatagatttttcaaatgttcaagcaactccttttatttttccctattatccaatttcggataacatag |
309 |
Q |
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| T |
50663505 |
caccttcgagtgtttgttcagggagatcatagatttttcaaatgttcaagcaactccttttgtttttccctattatccactttcggataacatag |
50663599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 50653831 - 50653901
Alignment:
| Q |
76 |
gacttaaaattggccaatcatcataatgacattatttatttcaaacatacactgtatactagaacaatgacata |
149 |
Q |
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| T |
50653831 |
gacttaaaagtggcccatcatcataatga---tatttatttcaaacacacaatgtatactagaacaatgacata |
50653901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 50654001 - 50654052
Alignment:
| Q |
178 |
tcaacttatacagaattgtaaaagtttctcaacctaccaccttcgagtgttt |
229 |
Q |
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| T |
50654001 |
tcaacttctacggaattgtaaaactttctcaacctaccaccttaaagtgttt |
50654052 |
T |
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